Alignment of oriC region and DnaA Box

DnaA box-like sequences

S. lividans 1326 .......... .......... .......... .......... .......... .......... .......... ..........
S. coelicolor A3(2) .......... .......... .......... .......... .......... .......... .......... ..........
S. avermitilis CAGCCACCGC AGCACGTCGC TGAGGGCGCC CCGGGACGAT TCCCGAGGGC GCCCTCTTCG TCTTCCCAAG GGCCCCTTCG 5288013
S. chrysomallus .......... .......... .......... .......... .......... .......... .......... ..........
S. antibioticus .......... .......... .......... .......... .......... .......... .......... ..........

S. lividans 1326 .......... .......... .......... .......... .......... .......... .......... ....CGACCG
S. coelicolor A3(2) .......... .......... .......... .......... .......... .......... .......... ....CGACCG 4396736
S. avermitilis GCCTCTCCGA GGGCGGCAAG GCGTCCTCCG CCTGCTGCTG CCGAAGGCCC GCTTCGAAGG CCCGCTCGCT ACTCCCAAAG 5288093
S. chrysomallus .......... .......... .......... .......... .......... .......... .......... .........G
S. antibioticus .......... .......... .......... ........CG CCGCCGCCTC TCCTACGGGC GCTCCGGGAT CTCTCCCGGG

S. lividans 1326 ACCC...CAC CGGTCACGAA GGCGCCTCCG G..GACCCCG GGGGCGCCTT TCCCATGCCC CTGGGTAACC CCAGGCTGTC
S. coelicolor A3(2) ACCC...CAC CGGTCACGAA GGCGCCTCCG G..GACCCCG GGGGCGCCTT TCCCATGCCC CTGGGTAACC CCAGGCTGTC 4396811
S. avermitilis GCCCGCTCAC TGCTTCCGAG AGCGTTCAGC GCCGTTCCCC AGGACGTCTT TCGC.CGGTC CTGAGGCGTC TTTCGCCGCT 5288172
S. chrysomallus CGCCTGTCAC GGACCTCCAC CG.GTCCGAG GCAGGCGCTT TTTTTGCGTT TC.CAGGCCC GCAGCGGACC GTCCAGGGCC
S. antibioticus GCGCCCGTAG CGTTCTTGGG GGCGTCCCCG G.AGGCGTTC CTGGAGGCCT CCTGAAGGTC GCGCCGGG.. GTCCGGGGGC

S. lividans 1326 CCCCCGGATG CCCCTCGCAT GCCCCCTC.G CACGTCCCCG CGTCTCCACC GGCTCGTACG GCTGTCCTGT CCGCTGTTCG
S. coelicolor A3(2) CCCCCGGATG CCCCTCGCAT GCCCCCTC.G CACGTCCCCG CGTCTCCACC GGCTCGTACG GCTGTCCTGT CCGCTGTTCG 4396890
S. avermitilis CTCAAGGACG TTCTTCGC.C GCTTCCGA.G GCCGCGTGCG GGGCGCCGAC GGGCCGTGCA .CCGTCC.AC CCGCTGTTCG 5288248
S. chrysomallus TCGCAGCGGG CTGTCCAGAG CCTCCAGC.G GCTGTCCGAA GCCGACTGAA GCCCCGTAGG ...ACCCGA. .CGCTGTTCG
S. antibioticus CGCGCGGGGG TCATCGGCGG CCGACCACAG GCTGGGGACG GGCCGGGGAC GGGCCGGCGG CGAGGCCGG. ..GCCGTTCG

S. lividans 1326 AATCCCCGCC GGGTTACGGC CGTCCTCCAC A.GATTCGGC CAGTTTTTTC CGTCCACACC TTGGGGACTG GGAAGTTGTC
S. coelicolor A3(2) AATCCCCGCC GGGTTACGGC CGTCCTCCAC A.GATTCGGC CAGTTTTTTC CGTCCACACC TTGGGGACTG GGAAGTTGTC 4396969
S. avermitilis AATACGAGCC GAGTTACGGC CGCCCTCCAC A.GATATGCG GACTTTCTCG CGTCCACACC CTGGGGACTG GGAAGTTGTC 5288327
S. chrysomallus AATACTGGCT GCTCAGAGGC CCTTCTCCAC A.GATCCGGG AGAAATCTTC CGTCCACAGC CTGGGGACTG GGAAGTTGTC
S. antibioticus ATTGCGGCGT TCCGCTGGCG GGTTCTCCAC ACGATTGCGG AATGATCACC CGTCCACAGG GTGGGGACTG CGAAGTTATC
----1--- = - ---2---=

S. lividans 1326 CCGATCCTGT CCACAGGCAA GCCTGGTGAG GGATCATCAG GGCAGGTCAG GTCCCTGTGG ATTCGTGGAC GAAGGATCTC
S. coelicolor A3(2) CCGATCCTGT CCACAGGCAA GCCTGGTGAG GGATCATCAG GGCAGGTCAG GTCCCTGTGG ATTCGTGGAC GAAGGATCTC 4397049
S. avermitilis CAGATCGTGT CCACAGGGTG TGCTGTTAAA AGACCATCGT CCCAGCTCAA CAGCTTGTGG ATTGGTGGAC AGAAGATCTC 5288407
S. chrysomallus CATATTGCGT CCACAGGGCG CCCTGCCGAT ACTCCATCAG GCCAGGTCAC GTGGCTGGGG ATTTGTGGTC AACCTTCATC
S. antibioticus CGGATTCTGT CCACAGGTCC GCCTGGTGAC AGGCCATCCC ACCAGCTCAG ACCCCTGGGG AATTGTTGGC AAACGTTATC
-----3----= =---4-- -- -----

S. lividans 1326 CACAGGCTGT GGACAAAGAA ATGATCCACA GGCTGTGCAT TCA.GTTGTC CACGGACAAC CCACAGACTG GACCGGGTTG
S. coelicolor A3(2) CACAGGCTGT GGACAAAGAA ATGATCCACA GGCTGTGCAT TCA.GTTGTC CACGGACAAC CCACAGACTG GACCGGGTTG 4397128
S. avermitilis CACAGACTGT GGACAGAGTG ATGATCCACA GCCTGTGCAC CAA.GTTGTC CACCGGCGGC CCACAGGCTG AGCCCCGTTG 5288486
S. chrysomallus CACAGCCTGT GGACAGAATT TTCGTCCACA GG.TGGGCGT CGATGTTGTC CACCGGCGGC CCACAGACTG AGCCGCGTTG
S. antibioticus CACAGGATGT GGACAGAACT TTCGTCCACA GGGGGCCCAG AAG.GTTGTC CACCGGTCAC CCACAGGGAA GGGCCGGTTG
5--= =-- 6----- ----7---- = ---8 ---= ---

S. lividans 1326 TCCCCAGCGA TCACCAGCTT CTCCACATGC CTGTCCACTG TTCGGCAACG TGACGCGCCC TGTCACCGCG TCGAGTGAAA
S. coelicolor A3(2) TCCCCAGCGA TCACCAGCTT CTCCACATGC CTGTCCACTG TTCGGCAACG TGACGCGCCC TGTCACCGCG TCGAGTGAAA 4397208
S. avermitilis TCCCCAGCAA AACCCAGCTT CTCCACACGG CTGTCCACTG TTCGGCAACG CGACGCGCCT GCTCACCGTG TCGAGTGAAA 5288566
S. chrysomallus TCCCCAGCTT CTGCCTGCTT CTCCACACCC CTGTCCACTG TGCGGCAACG CAACACACGC TCTCACCGCC CGGAGTGAAA
S. antibioticus CCCACAGC.. ........TT CTCCACAGCC CTGTCCACTG TTCGGCAACG AAACACCCGT CCTCACCCCG TGGAGTGAAA
-9---= -- -10---= ----11--=

S. lividans 1326 GCCGTCACAC CGGGCTGCCT GGTTGGGCTG TGGGAAACGT GGGTAAAGCT GGGGACGGCG CTGGGGAGAA GTCGCCTCTC
S. coelicolor A3(2) GCCGTCACAC CGGGCTGCCT GGTTGGGCTG TGGGAAACGT GGGTAAAGCT GGGGACGGCG CTGGGGAGAA GTCGCCTCTC 4397288
S. avermitilis GGCGTCACAC CAAGGTGCCG GGTTGGCCTG TGGGGAACGT GGGTAAAGCT GGGGACGGCG TTGGGGAGAA GTGCCCCAAG 5288646
S. chrysomallus GGCGTCACAC CAAGGTGGTC GGTTGGGCTG TGGGGAACGT GGGTAAAGCT GGGGACAGGC CTGGGGAGAA GTGGCCCCCT
S. antibioticus GGCGTCACAC CAAGGGAGAC GGTTGGGCTG TGGGGAACCC GGGTAAAGCT GGGGACGACG CTGGGGAGAA CTCCCTGTGT
=- -12----

S. lividans 1326 CCTGTGCACG GTGTGTGCAG AACTTTCTGT TCTCCACAGA TA.CGCCCGG TTGTCCACCG GCTCCGCCCA CAGGACCCGT
S. coelicolor A3(2) CCTGTGCACG GTGTGTGCAG AACTTTCTGT TCTCCACAGA TA.CGCCCGG TTGTCCACCG GCTCCGCCCA CAGGACCCGT 4397367
S. avermitilis CCTGTGCATC GAGTGTGCAG AACTTTTCGC TGTCCACAGA TG.ACCCCGG TTGTCCACCG CCTCCACCCA CAGGGTCAGT 5288725
S. chrysomallus CCTGTGCATC GGGTGTGCAG AACTTTCGCC CGTCCACAGA AAGCCCCCGG TTGTCCACGG GCGCCACCCA CAGGACCGGT
S. antibioticus CCTGTGTACG GGGTGTGCAG AACTTTCGGG TGTCCACAGA GA.CACCTGG TTTTCCACCG GTTCCACCCA CAGGCACGGT
=---13- -- - --14---= ----15--= =--

S. lividans 1326 GGACAAAATT CCTGCCCCGA CCTGGGCAAA CGAGGTTATC CACGGTATCC ACAGGCCCTA CTACTACTGA CGACTAGAGA
S. coelicolor A3(2) GGACAAAATT CCTGCCCCGA CCTGGGCAAA CGAGGTTATC CACGGTATCC ACAGGCCCTA CTACTACTGA CGACTAGAGA 4397447
S. avermitilis GGACAAAATT TGGGGCCTGA CCTGCGAAAA CGAGGTTATC CACGGTTTCC ACAGGCCCTA CTACTACTCC CAACTAGAGA 5288805
S. chrysomallus GGACAAAAAA CAGTCGCTGA CCTGCGCAAA CGACGTTATC CACGGTATCC ACAAGGCCTA CTACTACTAC CACCCAGAGT
S. antibioticus GGATAAAAAA CTGGGTCTGA CCTGCGTGGA CGGGGTTATC CACGGTTTCC ACAGGCCCTA CTACTACTCC CACCTAGAGT
16---- ----17---=----18 --=

S. lividans 1326 GAGAGCGGAA TTCGTTTCGA AGCGGGTCCT GTGTACAACT CG.GCCTCTC GGGCCCGACC GCACCTCGTC ACGACTTGAC
S. coelicolor A3(2) GAGAGCGGAA TTCGTTTCGA AGCGGGTCCT GTGTACAACT CG.GCCTCTC GGGCCCGACC GCACCTCGTC ACGACTTGAC 4397526
S. avermitilis GAGCTGGGAA TCCGCTTCGA AGGGGGCCCT GTGCACAACT CG.CTGTCTC GGCCCCGGCT GCCGCTCGAC GCGACTTGAC 5288884
S. chrysomallus TAGCCAGGAA TCAGCTTCGA AGTGGG.CCT GTGTACAACT CGACCGTCGA CCGTCCGCGA ACGTCTTGGC CCGACTTGAC
S. antibioticus TAGCTCGGAA TCCGCTTTGA AGTGGGGCCT GTGCACAACT CG.GCGCCGG AGCCCCGAAC GCCCCTCGTC CCGACTTGAC
= --19----

S. lividans 1326 CCCGAACGGC ACCTACTGTC AGTGGGGTGC GTCAGACTGG TCCCCGGTGT TCTGCCCCTC ACAGCGGCGG GCGACAC.CG
S. coelicolor A3(2) CCCGAACGGC ACCTACTGTC AGTGGGGTGC GTCAGACTGG TCCCCGGTGT TCTGCCCCTC ACAGCGGCGG GCGACAC.CG 4397605
S. avermitilis CCAGGGCGGC AACGACTGTC AGTGCGGTGC GTCAGACTGG TCACCGGTGT CCTGCCCCTC ACAGGGATCG ACGACAC.CG 5288963
S. chrysomallus CCCGAGCAGC AACGACTGTC GGTGCCGATC GTCAGACTGG ACCCCGGAGC CT..CCCCAG CCCTCGGCAG GGAGCTC.CG
S. antibioticus CCCGAGCAGC ACCGAGTGTC GGTGGCGTAC GTCAGACTGG TTCCCGCAGT CGACGAAGAG CCAGCAACAA GCAGGAGGCG

S. lividans 1326 .GTCAGACGA CGAAGGCGAA GCAGGGCGAG CAGCGCCGGC AACAGCAGGA GGCGGCA.AC A-dnaN
S. coelicolor A3(2) .GTCAGACGA CGAAGGCGAA GCAGGGCGAG CAGCGCCGGC AACAGCAGGA GGCGGCA.AC A-dnaN 4397664
S. avermitilis AGTCAGACGA CGAAGGCCAG GCAGGGCGAG .AGCGCCGGC AATAGCAGGA GGCGGCTTAC G-dnaN 5289023
S. chrysomallus GTCCAGACGA CGAAGGCCA. GCAGGGCGAG .....CGAGC AACAGCAGGA GGCGGTT.CC G-dnaN
S. antibioticus GTTCCG-dnaN.... .......... .......... .......... .......... .......... .