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IDCP970_15810 TypeCDS
From3857090 nt length483
To3857572 aa length160
Gene pI11.49
DefinitionRNA polymerase subunit sigma-70 M.W (Da)17668
Note AseI frg.
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_3304 putative RNA polymerase ECF-subfamily sigma factor2266.0e-78
coelSCO4960 hypothetical protein1994.0e-67
sgrSGR_2576 putative RNA polymerase ECF-subfamily sigma factor1359.0e-42

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r41Sigma-70, region 494-13926.92.5e-06

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_098244472.1 RNA polymerase subunit sigma-70 [Streptomyces formicae] >gb 5619.4e-72
WP_055697690.1 MULTISPECIES: RNA polymerase subunit sigma-70 [Streptomyces] 4941.2e-61
WP_160506883.1 RNA polymerase subunit sigma-70 [Streptomyces sp. BA2] >gb 4881.4e-60
WP_106977079.1 RNA polymerase subunit sigma-70 [Streptomyces sp. NRRL S-920... 4761.2e-58
WP_150216495.1 RNA polymerase subunit sigma-70 [Streptomyces venezuelae] >g... 4621.0e-56
4635.5e-56
WP_181659990.1 hypothetical protein [Streptomyces sp. PSKA28] >lcl 4602.7e-55
WP_078067156.1 RNA polymerase subunit sigma-70 [Streptomyces jeddahensis] >... 4545.1e-55
WP_055563206.1 RNA polymerase subunit sigma-70 [Streptomyces atriruber] 4472.0e-54
WP_150185927.1 RNA polymerase subunit sigma-70 [Streptomyces venezuelae] >g... 4411.3e-53

PSORT result

LocalizationCertaintyPSORT said
Not Clear