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IDCP970_16555 TypeCDS
From4007090 nt length582
To4006509 aa length193
Gene pI5.53
Definition2'-5' RNA ligase family protein M.W (Da)20661
Note AseI frg.
SignalP v.4.0Non-secretory protein | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_3416 putative secreted protein3342.0e-119
coelSCO4840 putative secreted protein3142.0e-111
sgrSGR_2701 putative secreted protein2955.0e-104

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

2_5_RNA_ligase212'-5' RNA ligase superfamily13-15769.82.4e-19

LigT_PEase1LigT like Phosphoesterase31-8152.83.4e-14

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_098244345.1 2'-5' RNA ligase family protein [Streptomyces formicae] >gb 9091.0e-123
WP_055566134.1 2'-5' RNA ligase family protein [Streptomyces atriruber] 8941.5e-121
WP_150171286.1 MULTISPECIES: 2'-5' RNA ligase family protein [Streptomyces]... 8932.7e-121
WP_150185832.1 2'-5' RNA ligase family protein [Streptomyces venezuelae] >g... 8914.7e-121
WP_150216626.1 2'-5' RNA ligase family protein [Streptomyces venezuelae] >g... 8891.1e-120
WP_055532460.1 2'-5' RNA ligase family protein [Streptomyces alboniger] >gb... 8846.7e-120
WP_030779427.1 2'-5' RNA ligase family protein [Streptomyces sp. NRRL S-920... 8776.6e-119
WP_055699510.1 MULTISPECIES: 2'-5' RNA ligase family protein [Streptomyces] 8724.6e-118
WP_062778388.1 MULTISPECIES: 2'-5' RNA ligase family protein [Streptomyces]... 8708.8e-118
WP_160506774.1 2'-5' RNA ligase family protein [Streptomyces sp. BA2] >gb 8602.7e-116

PSORT result

LocalizationCertaintyPSORT said
Not Clear