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IDCP970_18555 TypeCDS
From4420216 nt length1194
To4419023 aa length397
Gene pI7.75
DefinitionRtcB family protein M.W (Da)42933
Note AseI frg.
SignalP v.4.0Non-secretory protein | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_4753 hypothetical protein7310.0e+00
coelSCO3299 hypothetical protein7250.0e+00
sgrSGR_4185 conserved hypothetical protein7080.0e+00

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

RtcB1tRNA-splicing ligase RtcB29-397429.12e-128

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_030791770.1 RtcB family protein [Streptomyces sp. NRRL S-920] 20010.0e+00
WP_055526997.1 RtcB family protein [Streptomyces alboniger] >gb 19990.0e+00
WP_125514337.1 RtcB family protein [Streptomyces sp. WAC 01529] >gb 19830.0e+00
WP_150170749.1 MULTISPECIES: RtcB family protein [Streptomyces] >gb 19550.0e+00
WP_076685069.1 MULTISPECIES: RtcB family protein [Streptomyces] >gb 19470.0e+00
WP_127909227.1 RtcB family protein [Streptomyces huasconensis] 19450.0e+00
WP_136240720.1 RtcB family protein [Streptomyces sp. A1499] >lcl 19430.0e+00
WP_131544803.1 RtcB family protein [Streptomyces sp. IBTA2] 19420.0e+00
WP_053560726.1 RtcB family protein [Streptomyces sp. CFMR 7] >gb 19420.0e+00
WP_127466729.1 RtcB family protein [Streptomyces sp. B27] 19390.0e+00

PSORT result

LocalizationCertaintyPSORT said
Not Clear