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IDCP970_18945 TypeCDS
From4508710 nt length540
To4509249 aa length179
Gene pI6.13
DefinitionSigE family RNA polymerase sigma factor M.W (Da)20682
Note AseI frg.
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_4706 putative RNA polymerase ECF-subfamily sigma factor3244.0e-116
coelSCO3356 ECF sigma factor2964.0e-105
sgrSGR_4125 putative RNA polymerase ECF-subfamily sigma factor3064.0e-108

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r4_21Sigma-70, region 4104-15560.01.3e-16

Sigma70_r41Sigma-70, region 4109-15751.74.7e-14

Sigma70_r21Sigma-70 region 215-7831.71e-07

Sigma70_ECF1ECF sigma factor95-16023.15.8e-05

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_055567865.1 MULTISPECIES: SigE family RNA polymerase sigma factor [Strep... 8442.9e-114
WP_030567966.1 MULTISPECIES: SigE family RNA polymerase sigma factor [Strep... 8391.6e-113
WP_138961132.1 MULTISPECIES: SigE family RNA polymerase sigma factor [uncla... 8391.6e-113
WP_055697761.1 MULTISPECIES: SigE family RNA polymerase sigma factor [Strep... 8382.3e-113
WP_030679845.1 MULTISPECIES: SigE family RNA polymerase sigma factor [Strep... 8364.4e-113
WP_168510000.1 SigE family RNA polymerase sigma factor [Streptomyces sp. S1... 8355.8e-113
WP_062771649.1 MULTISPECIES: SigE family RNA polymerase sigma factor [Strep... 8356.9e-113
WP_125514296.1 SigE family RNA polymerase sigma factor [Streptomyces sp. WA... 8357.8e-113
WP_030785636.1 MULTISPECIES: SigE family RNA polymerase sigma factor [Strep... 8348.7e-113
WP_164372953.1 SigE family RNA polymerase sigma factor [Streptomyces sp. SI... 8341.1e-112

PSORT result

LocalizationCertaintyPSORT said
Not Clear