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IDCP970_19530 TypeCDS
From4641874 nt length594
To4642467 aa length197
Gene pI9.49
Definitionsigma-70 family RNA polymerase sigma factor M.W (Da)22059
Note AseI frg.
SignalP v.4.0Non-secretory protein | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_6582 putative RNA polymerase ECF-subfamily sigma factor2417.0e-83
coelSCO0632 putative RNA polymerase sigma factor2482.0e-85
sgrSGR_5884 putative RNA polymerase ECF-subfamily sigma factor2612.0e-90

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 239-10558.44.6e-16

Sigma70_r4_21Sigma-70, region 4137-18947.01.6e-12

Sigma70_r41Sigma-70, region 4142-19042.92.5e-11

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_098243924.1 sigma-70 family RNA polymerase sigma factor [Streptomyces fo... 8301.5e-111
WP_119294996.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 7224.3e-95
WP_165245128.1 ECF RNA polymerase sigma factor SigK [Streptomyces sp. A7024... 7139.5e-94
WP_128556880.1 sigma-70 family RNA polymerase sigma factor [Streptomyces tr... 7009.0e-92
WP_051101932.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [u... 6921.5e-90
WP_089222145.1 sigma-70 family RNA polymerase sigma factor [Streptomyces gl... 6894.2e-90
WP_165333588.1 ECF RNA polymerase sigma factor SigK [Streptomyces sp. YC504... 6876.5e-90
WP_093610050.1 sigma-70 family RNA polymerase sigma factor [Streptomyces in... 6832.7e-89
WP_167968435.1 ECF RNA polymerase sigma factor SigK [Streptomyces lonarensi... 6703.1e-87
WP_077964879.1 sigma-70 family RNA polymerase sigma factor [Streptomyces ts... 6693.7e-87

PSORT result

LocalizationCertaintyPSORT said
Not Clear