-- | --

IDCP970_22040 TypeCDS
From5162831 nt length582
To5163412 aa length193
Gene pI9.67
DefinitionSigE family RNA polymerase sigma factor M.W (Da)21349
Note AseI frg.
SignalP v.4.0Signal peptide | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_4207 putative RNA polymerase ECF-subfamily sigma factor2901.0e-102
coelSCO4005 putative RNA polymerase sigma factor2813.0e-99
sgrSGR_3603 putative RNA polymerase ECF-subfamily sigma factor2955.0e-104

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r4_21Sigma-70, region 4130-18367.65.7e-19

Sigma70_r41Sigma-70, region 4136-18552.72.3e-14

Sigma70_r21Sigma-70 region 238-10334.21.6e-08

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_098243539.1 SigE family RNA polymerase sigma factor [Streptomyces formic... 9132.3e-124
WP_079036992.1 SigE family RNA polymerase sigma factor [Streptomyces luteoc... 8992.9e-122
WP_062770491.1 MULTISPECIES: SigE family RNA polymerase sigma factor [uncla... 8984.3e-122
ATL28970.1 putative RNA polymerase ECF-subfamily sigma factor [Streptomyces ... 8932.0e-121
AZM54241.1 SigE family RNA polymerase sigma factor [Streptomyces sp. WAC 015... 8891.0e-120
WP_076685400.1 MULTISPECIES: SigE family RNA polymerase sigma factor [Strep... 8891.0e-120
WP_030780347.1 SigE family RNA polymerase sigma factor [Streptomyces sp. NR... 8891.1e-120
EPH45995.1 putative RNA polymerase sigma-E factor [Streptomyces aurantiacus ... 8881.3e-120
WP_175613599.1 SigE family RNA polymerase sigma factor [Streptomyces huasco... 8871.8e-120
WP_150175725.1 MULTISPECIES: SigE family RNA polymerase sigma factor [Strep... 8845.7e-120

PSORT result

LocalizationCertaintyPSORT said
Not Clear