-- | --

IDCP970_22235 TypeCDS
From5203751 nt length864
To5202888 aa length287
Gene pI6.4
DefinitionRNA polymerase sigma factor SigF M.W (Da)31517
Note AseI frg.
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_4185 putative RNA polymerase sigma factor5000.0e+00
coelSCO4035 RNA polymerase sigma factor (fragment)4861.0e-176
sgrSGR_3551 RNA polymerase sigma factor, sigma F5060.0e+00

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 267-13666.81.1e-18

Sigma70_r41Sigma-70, region 4232-28061.93.1e-17

Sigma70_r31Sigma-70 region 3146-20956.03.1e-15

Sigma70_r4_21Sigma-70, region 4227-27940.61.5e-10

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_030780400.1 RNA polymerase sigma factor SigF [Streptomyces sp. NRRL S-92... 11642.4e-159
WP_125513836.1 SigB/SigF/SigG family RNA polymerase sigma factor [Streptomy... 11642.8e-159
WP_070321164.1 RNA polymerase sigma factor SigF [Streptomyces alboniger] >g... 11633.6e-159
WP_098243520.1 RNA polymerase sigma factor SigF [Streptomyces formicae] 11581.3e-158
WP_076685409.1 MULTISPECIES: RNA polymerase sigma factor SigF [Streptomyces... 11492.3e-157
KUL50076.1 RNA polymerase subunit sigma [Streptomyces sp. NRRL S-1521] 11482.8e-157
WP_055700244.1 MULTISPECIES: RNA polymerase sigma factor SigF [Streptomyces... 11483.0e-157
WP_175613634.1 SigB/SigF/SigG family RNA polymerase sigma factor [Streptomy... 11483.0e-157
WP_150184986.1 SigB/SigF/SigG family RNA polymerase sigma factor [Streptomy... 11473.8e-157
WP_107098037.1 RNA polymerase sigma factor SigF [Streptomyces atriruber] 11451.5e-156

PSORT result

LocalizationCertaintyPSORT said
Not Clear