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IDCP970_22960 TypeCDS
From5352321 nt length2016
To5350306 aa length671
Gene pI7.94
Definitionsigma-70 family RNA polymerase sigma factor M.W (Da)68704
Note AseI frg.
SignalP v.4.0Non-secretory protein | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_7476 putative hydrolase1162.0e-27
coelSCO4117 putative membrane protein4811.0e-162
sgrSGR_3904 conserved hypothetical protein4358.0e-145

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

NPCBM1NPCBM/NEW2 domain559-668107.17.5e-31

Sigma70_r21Sigma-70 region 2108-16842.73.7e-11

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_098243458.1 sigma-70 family RNA polymerase sigma factor [Streptomyces fo... 14450.0e+00
WP_161270828.1 sigma-70 family RNA polymerase sigma factor, partial [Strept... 13341.9e-178
WP_164440694.1 sigma-70 family RNA polymerase sigma factor, partial [Strept... 13342.0e-178
WP_165283357.1 sigma-70 family RNA polymerase sigma factor, partial [Strept... 13342.2e-178
NEA04546.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp. SID... 13332.4e-178
WP_161235417.1 sigma-70 family RNA polymerase sigma factor, partial [Strept... 13342.8e-178
WP_150169600.1 sigma-70 family RNA polymerase sigma factor [Streptomyces ve... 13274.9e-173
WP_037661629.1 sigma-70 family RNA polymerase sigma factor, partial [Strept... 12983.5e-172
WP_150184895.1 sigma-70 family RNA polymerase sigma factor [Streptomyces ve... 13213.7e-172
WP_157869102.1 sigma-70 family RNA polymerase sigma factor, partial [Strept... 12812.1e-170

PSORT result

LocalizationCertaintyPSORT said
Not Clear