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IDCP970_25195 TypeCDS
From5829301 nt length999
To5830299 aa length332
Gene pI5.26
Definitionsigma-70 family RNA polymerase sigma factor M.W (Da)36933
Note AseI frg.
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_3694 putative RNA polymerase sigma factor5860.0e+00
coelSCO3202 RNA polymerase principal sigma factor5750.0e+00
sgrSGR_4276 RNA polymerase principal sigma factor hrdD5690.0e+00

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r31Sigma-70 region 3179-25590.26.9e-26

Sigma70_r21Sigma-70 region 2100-16974.83.6e-21

Sigma70_r41Sigma-70, region 4269-32154.08.5e-15

Sigma70_r1_21Sigma-70 factor, region 1.233-6641.97.3e-11

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_098243090.1 sigma-70 family RNA polymerase sigma factor [Streptomyces fo... 15870.0e+00
WP_150184604.1 sigma-70 family RNA polymerase sigma factor [Streptomyces ve... 15560.0e+00
WP_069885299.1 sigma-70 family RNA polymerase sigma factor [Streptomyces lu... 15510.0e+00
WP_055563458.1 sigma-70 family RNA polymerase sigma factor [Streptomyces at... 15510.0e+00
WP_150217930.1 sigma-70 family RNA polymerase sigma factor [Streptomyces ve... 15500.0e+00
WP_030786332.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 15450.0e+00
WP_150168993.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 15440.0e+00
WP_127908771.1 sigma-70 family RNA polymerase sigma factor [Streptomyces hu... 15350.0e+00
WP_125513317.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 15330.0e+00
WP_062780762.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [u... 15230.0e+00

PSORT result

LocalizationCertaintyPSORT said
Not Clear