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IDCP970_29865 TypeCDS
From6889299 nt length1290
To6890588 aa length429
Gene pI4.77
DefinitionRNA polymerase sigma factor M.W (Da)47266
Note AseI frg.
SignalP v.4.0Non-secretory protein | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_5679 putative RNA polymerase sigma factor6440.0e+00
coelSCO2465 RNA polymerase principal sigma factor5510.0e+00
sgrSGR_5067 putative RNA polymerase principal sigma factor5730.0e+00

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r31Sigma-70 region 3275-35195.51.5e-27

Sigma70_r21Sigma-70 region 2196-26583.56.6e-24

Sigma70_r41Sigma-70, region 4364-41779.31.1e-22

Sigma70_r1_21Sigma-70 factor, region 1.2131-16456.02.8e-15

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_098242347.1 RNA polymerase sigma factor [Streptomyces formicae] 19970.0e+00
WP_055698359.1 MULTISPECIES: RNA polymerase sigma factor [Streptomyces] 18840.0e+00
WP_150183966.1 sigma-70 family RNA polymerase sigma factor [Streptomyces ve... 18800.0e+00
WP_150218801.1 sigma-70 family RNA polymerase sigma factor [Streptomyces ve... 18770.0e+00
WP_150167448.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 18630.0e+00
WP_136240517.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 18570.0e+00
WP_062776985.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 18520.0e+00
WP_076686507.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 18400.0e+00
WP_055527616.1 RNA polymerase sigma factor [Streptomyces alboniger] >gb 18310.0e+00
WP_135335246.1 RNA polymerase sigma factor [Streptomyces sp. MZ04] >lcl 18010.0e+00

PSORT result

LocalizationCertaintyPSORT said
Not Clear