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IDCP970_42010 TypeCDS
From9708021 nt length939
To9707083 aa length312
Gene pI4.86
Definitionsigma-70 family RNA polymerase sigma factor M.W (Da)33626
Note AseI frg.
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_663 putative RNA polymerase ECF-subfamily sigma factor3529.0e-123
coelSCO4938 putative ECF-sigma factor3606.0e-126
sgrSGR_765 putative RNA polymerase ECF-subfamily sigma factor3483.0e-121

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 223-8647.31.3e-12

Sigma70_r4_21Sigma-70, region 4131-18335.18e-09

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_098240341.1 RNA polymerase sigma factor SigJ [Streptomyces formicae] >gb... 13890.0e+00
WP_175590712.1 RNA polymerase sigma factor SigJ [Nonomuraea sp. SMC257] >gb... 11431.7e-155
WP_160508201.1 RNA polymerase sigma factor SigJ [Streptomyces sp. BA2] >gb 11421.9e-155
WP_055569373.1 RNA polymerase sigma factor SigJ [Streptomyces atriruber] 11301.2e-153
WP_127934081.1 RNA polymerase sigma factor SigJ [Nonomuraea polychroma] >gb... 11292.0e-153
WP_176163174.1 RNA polymerase sigma factor SigJ [Streptomyces sp. NA00687] ... 11282.9e-153
WP_125514232.1 RNA polymerase sigma factor SigJ [Streptomyces sp. WAC 01529... 11275.3e-153
WP_067132068.1 RNA polymerase sigma factor SigJ [Microtetraspora malaysiens... 11257.4e-153
WP_091645445.1 RNA polymerase sigma factor SigJ [Micromonospora pallida] >e... 11222.5e-152
WP_150477164.1 RNA polymerase sigma factor SigJ [Streptomyces alboniger] >g... 11182.1e-151

PSORT result

LocalizationCertaintyPSORT said
Not Clear