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IDSACE_0826 TypeCDS
From923978 nt length3588
To927565 aa length1195
Genemfd pI5.27
Definitiontranscription-repair coupling factor M.W (Da)129886
Note AseI frg.B
SignalP v.4.0Non-secretory protein | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_3549 putative transcriptional-repair coupling factor13840.0e+00
coelSCO3109 putative transcriptional-repair coupling factor13140.0e+00
sgrSGR_4422 putative transcriptional-repair coupling factor14020.0e+00
scabSCAB54321 putative transcriptional-repair coupling factor14120.0e+00
saceSCAB54321 putative transcriptional-repair coupling factor14120.0e+00
nfarnfa48750 putative transcription-repair coupling factor14240.0e+00

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

CarD_CdnL_TRCF1CarD-like/TRCF domain507-606111.22.8e-32

TRCF1TRCF domain1042-112290.18.4e-26

DEAD1DEAD/DEAH box helicase656-79760.31.7e-16

Helicase_C1Helicase conserved C-terminal domain841-94057.41.5e-15

ResIII1Type III restriction enzyme, res subunit639-79227.13.3e-06

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_009944239.1 transcription-repair coupling factor [Saccharopolyspora eryt... 58460.0e+00
WP_010316306.1 transcription-repair coupling factor [Saccharopolyspora spin... 52250.0e+00
WP_093155751.1 transcription-repair coupling factor [Saccharopolyspora anti... 51800.0e+00
WP_093349651.1 transcription-repair coupling factor [Saccharopolyspora jian... 51780.0e+00
WP_093265898.1 transcription-repair coupling factor [Saccharopolyspora shan... 51780.0e+00
WP_093415196.1 transcription-repair coupling factor [Saccharopolyspora flav... 51390.0e+00
WP_029721759.1 transcription-repair coupling factor [Saccharopolyspora rect... 49890.0e+00
WP_092597883.1 transcription-repair coupling factor [Actinopolyspora xinjia... 48600.0e+00
WP_017976609.1 transcription-repair coupling factor [Actinopolyspora haloph... 48530.0e+00
WP_092526455.1 transcription-repair coupling factor [Actinopolyspora sahare... 48500.0e+00

PSORT result

LocalizationCertaintyPSORT said
Not Clear