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IDSACE_1037 TypeCDS
From1152963 nt length606
To1152358 aa length201
Gene pI5.62
Definitionputative ECF family RNA polymerase sigma factor M.W (Da)22892
Note AseI frg.H
SignalP v.4.0Non-secretory protein | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_3117 putative RNA polymerase ECF-subfamily sigma factor2645.0e-72
coelSCO5147 putative ECF-subfamily sigma factor2462.0e-66
sgrSGR_2378 putative RNA polymerase ECF-subfamily sigma factor2701.0e-73
scabSCAB31151 putative RNA polymerase sigma factor2477.0e-67
saceSCAB31151 putative RNA polymerase sigma factor2477.0e-67
nfarnfa47290 putative sigma factor2582.0e-70

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 237-10273.48.2e-21

Sigma70_r4_21Sigma-70, region 4135-18560.49e-17

Sigma70_r41Sigma-70, region 4138-18647.21.1e-12

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
CAM00369.1 putative ECF family RNA polymerase sigma factor [Saccharopolyspo... 9903.9e-136
WP_085982030.1 RNA polymerase sigma factor SigE [Saccharopolyspora erythrae... 9633.5e-132
WP_009949782.1 RNA polymerase sigma factor SigE [Saccharopolyspora erythrae... 9373.3e-128
SDW67832.1 RNA polymerase, sigma 29 subunit, SigE [Saccharopolyspora shando... 8771.1e-118
WP_093262363.1 RNA polymerase sigma factor SigE [Saccharopolyspora shandong... 8593.2e-116
SEG77914.1 RNA polymerase, sigma 29 subunit, SigE [Saccharopolyspora hirsut... 8342.0e-112
SFN56239.1 RNA polymerase sigma-70 factor, ECF subfamily [Saccharopolyspora... 8324.1e-112
WP_029719498.1 RNA polymerase sigma factor SigE [Saccharopolyspora rectivir... 8231.1e-110
WP_029535169.1 RNA polymerase sigma factor SigE [Saccharopolyspora spinosa] 8202.2e-110
WP_093349251.1 RNA polymerase sigma factor SigE [Saccharopolyspora jiangxie... 8161.2e-109

PSORT result

LocalizationCertaintyPSORT said
Not Clear