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IDSACE_4776 TypeCDS
From5337138 nt length939
To5336200 aa length312
Gene pI7.83
Definitionsigma factor, sigma 70 type, group 4 (ECF) M.W (Da)33528
Note AseI frg.E
SignalP v.4.0Non-secretory protein | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_7068 putative RNA polymerase ECF-subfamily sigma factor2548.0e-69
coelSCO2742 putative sigma factor.3971.0e-111
sgrSGR_6264 putative RNA polymerase ECF-subfamily sigma factor2524.0e-68
scabSCAB78001 putative RNA polymerase sigma factor2541.0e-68
saceSCAB78001 putative RNA polymerase sigma factor2541.0e-68
nfarnfa22150 putative sigma factor3492.0e-97

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 229-9246.61.9e-12

Sigma70_r4_21Sigma-70, region 4124-17545.93.1e-12

Sigma70_r41Sigma-70, region 4129-17533.61.9e-08

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_009948905.1 RNA polymerase sigma-70 factor [Saccharopolyspora erythraea]... 12871.1e-177
WP_088962337.1 RNA polymerase sigma-70 factor [Micromonospora purpureochrom... 11091.2e-150
WP_025356719.1 RNA polymerase sigma-70 factor [Kutzneria albida] >gb 11063.4e-150
SCL15269.1 RNA polymerase sigma-70 factor, ECF subfamily [Micromonospora rh... 10942.2e-148
WP_089011499.1 RNA polymerase sigma-70 factor [Micromonospora inositola] >e... 10691.3e-144
WP_092528872.1 RNA polymerase sigma-70 factor [Yuhushiella deserti] >emb 10664.0e-144
WP_091258014.1 RNA polymerase sigma-70 factor [Micromonospora chaiyaphumens... 10594.2e-143
WP_005457509.1 RNA polymerase sigma-70 factor [Saccharomonospora cyanea] >g... 10551.9e-142
WP_063023483.1 RNA polymerase sigma-70 factor [Nocardia niwae] 10501.0e-141
WP_013426289.1 RNA polymerase sigma-70 factor [Frankia inefficax] >gb 10473.0e-141

PSORT result

LocalizationCertaintyPSORT said
Not Clear