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IDSACE_5237 TypeCDS
From5857298 nt length762
To5856537 aa length253
Gene pI9.1
Definitionpseudouridylate synthase ribosomal large subunit M.W (Da)28104
Note AseI frg.M
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_6512 putative pseudouridine synthase2532.0e-68
coelSCO1768 putative pseudouridine synthase2385.0e-64
sgrSGR_5729 putative pseudouridine synthase2524.0e-68
scabSCAB71881 putative pseudouridine synthase2532.0e-68
saceSCAB71881 putative pseudouridine synthase2532.0e-68
nfarnfa20110 putative pseudouridine synthase2492.0e-67

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

PseudoU_synth_21RNA pseudouridylate synthase78-21077.41.1e-21

S41S4 domain16-5952.03.8e-14

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_009942377.1 rRNA pseudouridine synthase [Saccharopolyspora erythraea] >e... 12912.6e-180
WP_051707703.1 rRNA pseudouridine synthase [Saccharopolyspora rectivirgula]... 10535.0e-144
WP_093357416.1 rRNA pseudouridine synthase [Saccharopolyspora jiangxiensis]... 10482.6e-143
WP_093157078.1 rRNA pseudouridine synthase [Saccharopolyspora antimicrobica... 10466.1e-143
WP_093277029.1 rRNA pseudouridine synthase [Saccharopolyspora shandongensis... 10458.5e-143
WP_010697176.1 rRNA pseudouridine synthase [Saccharopolyspora spinosa] 10353.1e-141
WP_093421443.1 rRNA pseudouridine synthase [Saccharopolyspora flava] >emb 10111.5e-137
WP_092604200.1 rRNA pseudouridine synthase [Actinopolyspora xinjiangensis] ... 9303.4e-125
WP_092627172.1 rRNA pseudouridine synthase [Actinopolyspora mzabensis] >emb... 9271.0e-124
WP_092926850.1 rRNA pseudouridine synthase [Actinopolyspora alba] >emb 9251.7e-124

PSORT result

LocalizationCertaintyPSORT said
Not Clear