-- | --

IDSACE_5346 TypeCDS
From5982195 nt length2391
To5984585 aa length796
Gene pI6.25
DefinitionRNA binding S1:resolvase, RNase H-like fold M.W (Da)86327
Note AseI frg.O
SignalP v.4.0Non-secretory protein | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_1669 putative transcription accessory protein11400.0e+00
coelSCO6743 putative transcriptional accessory protein10450.0e+00
sgrSGR_984 putative transcription accessory protein10980.0e+00
scabSCAB13181 putative transcription accessory protein11430.0e+00
saceSCAB13181 putative transcription accessory protein11430.0e+00
nfarnfa41490 putative RNA-binding protein9760.0e+00

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Tex_N1Tex-like protein N-terminal domain9-193228.63.3e-68

Tex_YqgF1Tex protein YqgF-like domain327-452176.13.3e-52

HHH_31Helix-hairpin-helix motif492-55695.81.2e-27

S11S1 RNA binding domain650-72168.34.8e-19

HHH_71Helix-hairpin-helix motif465-55837.42.3e-09

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_011874690.1 RNA-binding transcriptional accessory protein [Saccharopolys... 34670.0e+00
WP_021341854.1 RNA-binding transcriptional accessory protein, partial [Sacc... 34160.0e+00
WP_093266674.1 RNA-binding transcriptional accessory protein [Saccharopolys... 29630.0e+00
WP_044576514.1 RNA-binding transcriptional accessory protein, partial [Sacc... 29240.0e+00
WP_093158720.1 RNA-binding transcriptional accessory protein [Saccharopolys... 29200.0e+00
WP_093357997.1 RNA-binding transcriptional accessory protein [Saccharopolys... 29130.0e+00
SFO68425.1 uncharacterized protein SAMN05421805_12195 [Saccharopolyspora an... 29110.0e+00
WP_093415956.1 RNA-binding transcriptional accessory protein [Saccharopolys... 29090.0e+00
SEG96670.1 uncharacterized protein SAMN02982929_06516 [Saccharopolyspora hi... 29060.0e+00
WP_029721815.1 RNA-binding transcriptional accessory protein [Saccharopolys... 28120.0e+00

PSORT result

LocalizationCertaintyPSORT said
Not Clear