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IDSACE_6258 TypeCDS
From7013470 nt length1146
To7012325 aa length381
Gene pI5.32
DefinitionRNA polymerase sigma factor M.W (Da)41350
Note AseI frg.A
SignalP v.4.0Non-secretory protein | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_961 putative RNA polymerase ECF-subfamily sigma factor6262.0e-180
coelSCO4452 hypothetical protein5084.0e-145
sgrSGR_6932 putative RNA polymerase ECF-subfamily sigma factor5752.0e-165
scabSCAB87051 putative RNA polymerase ECF-subfamily sigma factor6022.0e-173
saceSCAB87051 putative RNA polymerase ECF-subfamily sigma factor6022.0e-173
nfarnfa28080 putative sigma factor4375.0e-124

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 25-6937.91e-09

Sigma70_r4_21Sigma-70, region 498-14830.02.8e-07

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_009948507.1 RNA polymerase sigma24 factor [Saccharopolyspora erythraea] ... 14550.0e+00
WP_086574335.1 RNA polymerase subunit sigma-24 [Streptomyces alboverticilla... 13950.0e+00
WP_093481619.1 MULTISPECIES: RNA polymerase subunit sigma-24 [Streptomyces]... 13950.0e+00
WP_006606818.1 RNA polymerase sigma24 factor [Streptomyces auratus] >gb 13910.0e+00
WP_030176129.1 RNA polymerase sigma24 factor [Streptomyces sp. NRRL S-813] 13710.0e+00
WP_067384329.1 RNA polymerase subunit sigma-24 [Streptomyces olivochromogen... 13700.0e+00
WP_030040638.1 RNA polymerase sigma24 factor [Streptomyces resistomycificus... 13700.0e+00
SCL34996.1 RNA polymerase, sigma subunit, ECF family [Micromonospora rhizos... 13660.0e+00
SCL61252.1 RNA polymerase, sigma subunit, ECF family [Micromonospora eburne... 13650.0e+00
WP_089229490.1 RNA polymerase subunit sigma-24 [Streptomyces glauciniger] 13590.0e+00

PSORT result

LocalizationCertaintyPSORT said
Not Clear