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IDSACE_6398 TypeCDS
From7168872 nt length1167
To7170038 aa length388
Gene pI5.57
Definitionputative RNA polymerase, sigma-24 subunit, ECF subfamily M.W (Da)42604
Note AseI frg.A
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
coelSCO4757 undefined product2381.0e-63
sgrSGR_2792 putative RNA polymerase ECF-subfamily sigma factor2959.0e-81
scabSCAB36341 putative RNA polymerase sigma factor2863.0e-78
saceSCAB36341 putative RNA polymerase sigma factor2863.0e-78

*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 28-5838.56.6e-10

Sigma70_r4_21Sigma-70, region 493-14232.93.3e-08

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
CAM05568.1 putative RNA polymerase, sigma-24 subunit, ECF subfamily [Saccha... 17510.0e+00
WP_009945963.1 RNA polymerase subunit sigma-24 [Saccharopolyspora erythraea... 17440.0e+00
WP_087556079.1 RNA polymerase subunit sigma-24 [Rhodococcus sp. NCIMB 12038... 13980.0e+00
SHN13012.1 RNA polymerase sigma-70 factor, ECF subfamily [Cryptosporangium ... 13900.0e+00
WP_073255447.1 RNA polymerase subunit sigma-24 [Cryptosporangium aurantiacu... 13890.0e+00
WP_061044411.1 RNA polymerase subunit sigma-24 [Rhodococcus sp. SC4] >gb 13880.0e+00
WP_005252488.1 RNA polymerase subunit sigma-24 [Rhodococcus opacus] >gb 13830.0e+00
WP_061701510.1 RNA polymerase subunit sigma-24 [Rhodococcus sp. LB1] >gb 13800.0e+00
WP_012690131.1 RNA polymerase subunit sigma-24 [Rhodococcus opacus] >dbj 13790.0e+00
WP_037238966.1 ECF subfamily RNA polymerase sigma-24 subunit [Rhodococcus w... 13740.0e+00

PSORT result

LocalizationCertaintyPSORT said
Not Clear