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IDSACE_6998 TypeCDS
From7815798 nt length582
To7815217 aa length193
Gene pI8.06
DefinitionRNA polymerase sigma factor M.W (Da)20978
Note AseI frg.P
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_6785 putative RNA polymerase ECF-subfamily sigma factor584.0e-10
coelSCO6996 putative RNA polymerase sigma factor.1308.0e-32
sgrSGR_5974 putative RNA polymerase ECF-subfamily sigma factor532.0e-08
scabSCAB74361 putative RNA polymerase sigma factor762.0e-15
saceSCAB74361 putative RNA polymerase sigma factor762.0e-15

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 228-9555.23.9e-15

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_009946173.1 sigma-70 family RNA polymerase sigma factor [Saccharopolyspo... 9001.1e-122
WP_093269574.1 sigma-70 family RNA polymerase sigma factor [Saccharopolyspo... 5823.1e-74
WP_010312290.1 sigma-70 family RNA polymerase sigma factor [Saccharopolyspo... 5771.5e-73
WP_093145654.1 sigma-70 family RNA polymerase sigma factor [Saccharopolyspo... 5711.3e-72
WP_093354143.1 sigma-70 family RNA polymerase sigma factor [Saccharopolyspo... 5683.6e-72
WP_029719228.1 sigma-70 family RNA polymerase sigma factor [Saccharopolyspo... 5321.0e-66
WP_092525678.1 sigma-70 family RNA polymerase sigma factor [Actinopolyspora... 5269.9e-66
WP_017976962.1 sigma-70 family RNA polymerase sigma factor [Actinopolyspora... 5191.3e-64
WP_093414731.1 sigma-70 family RNA polymerase sigma factor [Saccharopolyspo... 5061.2e-62
WP_092626490.1 sigma-70 family RNA polymerase sigma factor [Actinopolyspora... 5033.1e-62

PSORT result

LocalizationCertaintyPSORT said
Not Clear