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IDSACE_7161 TypeCDS
From7966198 nt length519
To7965680 aa length172
Gene pI9.29
DefinitionRNA polymerase ECF sigma factor M.W (Da)19478
Note AseI frg.L
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_3351 putative RNA polymerase ECF-subfamily sigma factor954.0e-21
scabSCAB34791 putative RNA polymerase sigma factor941.0e-20
saceSCAB34791 putative RNA polymerase sigma factor941.0e-20

*avm, Streptomyces avermitilis; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r4_21Sigma-70, region 4105-15749.62.1e-13

Sigma70_r21Sigma-70 region 217-7944.49.6e-12

Sigma70_r41Sigma-70, region 4111-15942.04.4e-11

Sigma70_ECF1ECF sigma factor16-14935.67.3e-09

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_009948776.1 SigE family RNA polymerase sigma factor [Saccharopolyspora e... 7752.6e-104
WP_093264083.1 SigE family RNA polymerase sigma factor [Saccharopolyspora s... 6981.4e-92
WP_010312744.1 SigE family RNA polymerase sigma factor [Saccharopolyspora s... 6981.4e-92
WP_093358235.1 SigE family RNA polymerase sigma factor [Saccharopolyspora j... 6763.3e-89
WP_029721622.1 SigE family RNA polymerase sigma factor [Saccharopolyspora r... 6711.9e-88
WP_093159147.1 SigE family RNA polymerase sigma factor [Saccharopolyspora a... 6702.4e-88
WP_093419930.1 SigE family RNA polymerase sigma factor [Saccharopolyspora f... 6442.2e-84
WP_092525370.1 SigE family RNA polymerase sigma factor [Actinopolyspora sah... 6293.9e-82
WP_019856263.1 SigE family RNA polymerase sigma factor [Actinopolyspora mor... 6294.9e-82
WP_073479556.1 SigE family RNA polymerase sigma factor [Streptoalloteichus ... 6172.6e-80

PSORT result

LocalizationCertaintyPSORT said
Not Clear