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IDSAM23877_0352 TypeCDS
From307681 nt length936
To306746 aa length311
Gene pI6.01
Definitionputative RNA polymerase ECF-subfamily sigma factor M.W (Da) 34014
NoteEvidence 3 : Function proposed based on presence of conserved amino acid motif%2C structural feature or limited homology AseI frg.
SignalP v.4.0Non-secretory protein | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_424 putative RNA polymerase ECF-subfamily sigma factor5170.0e+00
coelSCO0159 putative ECF sigma factor4491.0e-160
sgrSGR_240 putative RNA polymerase ECF-subfamily sigma factor4833.0e-174

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 29-7262.32.4e-17

Sigma70_r4_21Sigma-70, region 4108-16047.49.8e-13

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_053126093.1 sigma-70 family RNA polymerase sigma factor [Streptomyces am... 14160.0e+00
GGW68736.1 DNA-directed RNA polymerase sigma-70 factor [Streptomyces xantho... 13240.0e+00
WP_189892473.1 sigma-70 family RNA polymerase sigma factor [Streptomyces xa... 13230.0e+00
WP_215185547.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 13180.0e+00
WP_189187934.1 sigma-70 family RNA polymerase sigma factor [Streptomyces al... 13170.0e+00
WP_189325451.1 sigma-70 family RNA polymerase sigma factor [Streptomyces fl... 13110.0e+00
WP_141316252.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 13091.1e-180
WP_086604987.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sw... 13081.7e-180
WP_181661893.1 sigma-70 family RNA polymerase sigma factor [Streptomyces hi... 13039.5e-180
WP_033318358.1 sigma-70 family RNA polymerase sigma factor [Streptomyces ye... 13031.0e-179

PSORT result

LocalizationCertaintyPSORT said
Not Clear