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IDSAM23877_0480 TypeCDS
From447177 nt length897
To448073 aa length298
Gene pI6.53
Definitionputative ECF-family RNA polymerase sigma factor M.W (Da) 32865
NoteEvidence 3 : Function proposed based on presence of conserved amino acid motif%2C structural feature or limited homology AseI frg.
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
coelSCO7112 putative ECF-family RNA polymerase sigma factor4892.0e-177

*coel, Streptomyces coelicolor A3(2);

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 219-8355.04.5e-15

Sigma70_r4_21Sigma-70, region 4113-16549.91.7e-13

Sigma70_r41Sigma-70, region 4118-16527.71.2e-06

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_053126282.1 RNA polymerase sigma-70 factor [Streptomyces ambofaciens] >g... 13560.0e+00
WP_161327841.1 RNA polymerase sigma-70 factor [Streptomyces sp. SID5789] >g... 12131.8e-166
WP_122619464.1 RNA polymerase sigma-70 factor [Streptomyces sp. Tu 4128] 12052.8e-165
WP_189905674.1 RNA polymerase sigma-70 factor [Streptomyces spiralis] >dbj 11862.2e-162
WP_030177105.1 RNA polymerase sigma-70 factor [Streptomyces sp. NRRL S-813] 11853.4e-162
WP_103812175.1 RNA polymerase sigma-70 factor [Streptomyces sp. Ru62] >gb 11759.6e-161
WP_059267092.1 RNA polymerase sigma-70 factor [Streptomyces corchorusii] >g... 11731.9e-160
WP_189892553.1 RNA polymerase sigma-70 factor [Streptomyces canarius] >dbj 11731.9e-160
WP_225811984.1 RNA polymerase sigma-70 factor [Streptomyces sp. SBTS01] 11662.3e-159
WP_161562938.1 RNA polymerase sigma-70 factor [Streptomyces antimycoticus] ... 11629.0e-159

PSORT result

LocalizationCertaintyPSORT said
Not Clear