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IDSAM23877_0482 TypeCDS
From449285 nt length873
To448413 aa length290
Gene pI7.13
Definitionputative RNA polymerase sigma factor M.W (Da) 31121
NoteEvidence 3 : Function proposed based on presence of conserved amino acid motif%2C structural feature or limited homology AseI frg.
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
coelSCO7099 putative RNA polymerase sigma factor3092.0e-106

*coel, Streptomyces coelicolor A3(2);

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 216-7722.09.5e-05

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_053126284.1 RNA polymerase subunit sigma [Streptomyces ambofaciens] >gb 13710.0e+00
WP_063481054.1 RNA polymerase subunit sigma [Streptomyces ambofaciens] >gb 13470.0e+00
WP_122619463.1 RNA polymerase subunit sigma [Streptomyces sp. Tu 4128] 9464.2e-126
WP_030654652.1 MULTISPECIES: RNA polymerase sigma factor [Streptomyces] 9143.1e-121
WP_031093613.1 MULTISPECIES: RNA polymerase sigma factor [unclassified Stre... 9126.3e-121
WP_030987759.1 RNA polymerase sigma factor [Streptomyces sp. NRRL WC-3744] 9082.0e-120
WP_196943879.1 RNA polymerase subunit sigma [Streptomyces sp. MC1] >lcl 9012.6e-119
WP_189905730.1 RNA polymerase subunit sigma [Streptomyces spiralis] 9005.1e-119
WP_085575441.1 RNA polymerase subunit sigma [Streptomyces sp. 13-12-16] >gb... 8863.6e-117
WP_161562932.1 RNA polymerase subunit sigma [Streptomyces antimycoticus] >d... 8849.9e-117

PSORT result

LocalizationCertaintyPSORT said
Not Clear