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IDSAM23877_0552 TypeCDS
From535300 nt length609
To534692 aa length202
GenesigC pI6.52
DefinitionECF RNA polymerase sigma factor SigC M.W (Da) 22071
Note AseI frg.
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_898 putative RNA polymerase ECF-subfamily sigma factor2714.0e-94
coelSCO0866 probable ECF-family sigma factor2686.0e-93
sgrSGR_6228 putative RNA polymerase ECF-subfamily sigma factor1862.0e-60

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 237-10358.83.1e-16

Sigma70_r4_21Sigma-70, region 4134-18557.47.6e-16

Sigma70_ECF1ECF sigma factor20-19029.65e-07

Sigma70_r41Sigma-70, region 4138-18526.04.2e-06

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_174532183.1 sigma-70 family RNA polymerase sigma factor [Streptomyces am... 8478.0e-114
CAJ89479.1 putative ECF-family sigma factor [Streptomyces ambofaciens ATCC ... 8461.5e-113
WP_162494592.1 sigma-70 family RNA polymerase sigma factor [Streptomyces am... 8423.7e-113
ANB04438.1 RNA polymerase subunit sigma [Streptomyces ambofaciens] 8425.8e-113
WP_059413926.1 sigma-70 family RNA polymerase sigma factor [Streptomyces az... 7445.1e-98
WP_202279868.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 7333.0e-96
WP_189561475.1 sigma-70 family RNA polymerase sigma factor [Streptomyces pi... 7211.6e-94
SOD46797.1 RNA polymerase sigma-70 factor, ECF subfamily [Streptomyces sp. ... 7123.6e-93
WP_203625696.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 7084.9e-93
WP_189365630.1 sigma-70 family RNA polymerase sigma factor [Streptomyces va... 7106.4e-93

PSORT result

LocalizationCertaintyPSORT said
Not Clear