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IDSAM23877_0594 TypeCDS
From570761 nt length666
To570096 aa length221
Gene pI11.43
Definitionputative RNA polymerase ECF-subfamily sigma factor M.W (Da) 24594
NoteEvidence 3 : Function proposed based on presence of conserved amino acid motif%2C structural feature or limited homology AseI frg.
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
coelSCO5934 putative sigma factor1151.0e-32
sgrSGR_1634 putative RNA polymerase ECF-subfamily sigma factor2731.0e-94

*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r4_21Sigma-70, region 4129-18052.72.3e-14

Sigma70_r21Sigma-70 region 229-9646.71.8e-12

Sigma70_r41Sigma-70, region 4133-18238.74.8e-10

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
AKZ53643.1 putative RNA polymerase ECF-subfamily sigma factor [Streptomyces ... 9652.6e-131
WP_053126461.1 RNA polymerase sigma factor [Streptomyces ambofaciens] >emb 9252.5e-125
WP_053140603.1 RNA polymerase sigma factor [Streptomyces ambofaciens] >gb 9029.0e-122
GGQ50018.1 siderophore-interacting protein [Streptomyces mutabilis] 8682.1e-116
WP_219188466.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 8443.0e-112
WP_191889338.1 RNA polymerase sigma factor [Streptomyces mutabilis] 8291.3e-110
WP_100046772.1 RNA polymerase sigma factor [Streptomyces sp. Alain-F2R5] >g... 8261.6e-109
PAK27675.1 RNA polymerase [Streptomyces sp. alain-838] 8211.2e-108
WP_221354735.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 7761.5e-102
WP_100247925.1 RNA polymerase sigma factor [Streptomyces gancidicus] 7682.8e-101

PSORT result

LocalizationCertaintyPSORT said
Not Clear