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IDSAM23877_0637 TypeCDS
From612069 nt length957
To611113 aa length318
Gene pI4.98
Definitionputative RNA polymerase ECF-subfamily sigma factor M.W (Da) 34942
NoteEvidence 3 : Function proposed based on presence of conserved amino acid motif%2C structural feature or limited homology AseI frg.
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
sgrSGR_3571 putative RNA polymerase ECF-subfamily sigma factor4662.0e-167

*sgr, Streptomyces griseus IFO13350;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 211-7457.38.9e-16

Sigma70_r4_21Sigma-70, region 4111-16241.75.9e-11

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_053126535.1 RNA polymerase sigma factor SigJ [Streptomyces ambofaciens] ... 15710.0e+00
WP_187814963.1 RNA polymerase sigma factor SigJ [Streptomyces polyasparticu... 14170.0e+00
WP_093612406.1 RNA polymerase sigma-70 factor [Streptomyces indicus] >emb 14120.0e+00
WP_165333235.1 RNA polymerase sigma-70 factor [Streptomyces mesophilus] >gb... 13860.0e+00
WP_199548297.1 RNA polymerase sigma-70 factor [Streptomyces sp. N35] 13700.0e+00
WP_109186199.1 MULTISPECIES: RNA polymerase sigma factor SigJ [Streptomyces... 13170.0e+00
WP_062760875.1 MULTISPECIES: RNA polymerase sigma factor SigJ [unclassified... 13160.0e+00
WP_161374297.1 RNA polymerase sigma factor SigJ [Streptomyces sp. SID5770] ... 13065.5e-180
WP_121832995.1 RNA polymerase sigma-70 factor [Streptomyces sp. S1] 12988.5e-179
WP_030221545.1 RNA polymerase sigma factor SigJ [Streptomyces bikiniensis] 12822.3e-176

PSORT result

LocalizationCertaintyPSORT said
Not Clear