-- | --

IDSAM23877_0935 TypeCDS
From921758 nt length393
To921366 aa length130
Gene pI11.61
Definitionputative DNA-binding protein M.W (Da) 14061
NoteEvidence 3 : Function proposed based on presence of conserved amino acid motif%2C structural feature or limited homology AseI frg.
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_1148 putative DNA-binding protein1296.0e-40
coelSCO7279 possible DNA-binding protein1654.0e-54
sgrSGR_2603 putative DNA-binding protein982.0e-27

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

HTH_31Helix-turn-helix40-9436.43.5e-09

HTH_311Helix-turn-helix domain37-9634.91.4e-08

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_053127051.1 helix-turn-helix domain-containing protein [Streptomyces amb... 5444.3e-70
WP_063481289.1 helix-turn-helix domain-containing protein [Streptomyces amb... 5392.8e-69
WP_055420365.1 helix-turn-helix transcriptional regulator [Streptomyces pac... 4441.3e-54
WP_189233395.1 helix-turn-helix transcriptional regulator [Streptomyces fla... 4421.6e-54
WP_115745622.1 helix-turn-helix transcriptional regulator [Streptomyces sp.... 4432.0e-54
WP_164385877.1 helix-turn-helix transcriptional regulator [Streptomyces sp.... 4414.5e-54
KPC86209.1 DNA-binding protein [Streptomyces sp. NRRL WC-3753] 4405.7e-54
WP_108988067.1 helix-turn-helix transcriptional regulator [Streptomyces coe... 4397.7e-54
WP_122618679.1 helix-turn-helix transcriptional regulator [Streptomyces sp.... 4389.8e-54
WP_153181244.1 helix-turn-helix transcriptional regulator [Streptomyces sp.... 4371.8e-53

PSORT result

LocalizationCertaintyPSORT said
Not Clear