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IDSAM23877_1357 TypeCDS
From1381755 nt length450
To1382204 aa length149
Gene pI9.58
Definitionputative RNA polymerase ECF sigma factor M.W (Da) 16741
NoteEvidence 3 : Function proposed based on presence of conserved amino acid motif%2C structural feature or limited homology AseI frg.
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
coelSCO1276 RNA polymerase ECF sigma factor2612.0e-91

*coel, Streptomyces coelicolor A3(2);

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 22-5745.06.1e-12

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
AKZ54406.1 putative RNA polymerase ECF sigma factor [Streptomyces ambofacien... 6396.6e-84
EOY46274.1 RNA polymerase ECF sigma factor [Streptomyces lividans 1326] >gb 6267.2e-82
OKI79482.1 RNA polymerase subunit sigma-24 [Streptomyces sp. CB02414] 6213.2e-81
KYK13699.1 RNA polymerase subunit sigma-24 [Streptomyces sp. CC71] 6023.2e-78
AOW85859.1 RNA polymerase subunit sigma-24 [Streptomyces olivaceus] 6023.2e-78
PPS83107.1 hypothetical protein BZZ08_04793 [Streptomyces sp. MH60] 6005.4e-78
WP_162492089.1 sigma-70 family RNA polymerase sigma factor [Streptomyces am... 5992.0e-77
KOT98247.1 RNA polymerase subunit sigma24 [Streptomyces sp. NRRL F-4711] >gb... 5953.3e-77
EHN74294.1 RNA polymerase ECF sigma factor [Streptomyces coelicoflavus ZG065... 5911.5e-76
WP_161380845.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 5941.9e-76

PSORT result

LocalizationCertaintyPSORT said
Not Clear