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IDSAM23877_1619 TypeCDS
From1668344 nt length495
To1667850 aa length164
Gene pI9.31
DefinitionRNA polymerase sigma factor M.W (Da) 17984
Note AseI frg.
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_6785 putative RNA polymerase ECF-subfamily sigma factor2053.0e-69
coelSCO1564 putative RNA polymerase sigma factor2225.0e-76
sgrSGR_5974 putative RNA polymerase ECF-subfamily sigma factor1496.0e-47

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 25-6924.51.5e-05

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_053128156.1 sigma-70 family RNA polymerase sigma factor [Streptomyces am... 3727.3e-43
WP_063481606.1 sigma-70 family RNA polymerase sigma factor [Streptomyces am... 3692.2e-42
WP_189230574.1 sigma-70 family RNA polymerase sigma factor [Streptomyces fl... 3502.0e-39
WP_225638734.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [u... 3492.0e-39
PZT69931.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp. SW4... 3432.0e-38
WP_077800749.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 3422.6e-38
WP_188183000.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 3413.9e-38
WP_161167720.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 3397.7e-38
WP_055415995.1 sigma-70 family RNA polymerase sigma factor [Streptomyces pa... 3397.8e-38
WP_189283949.1 sigma-70 family RNA polymerase sigma factor [Streptomyces an... 3336.4e-37

PSORT result

LocalizationCertaintyPSORT said
Not Clear