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IDSAM23877_1950 TypeCDS
From2015265 nt length567
To2015831 aa length188
Gene pI10.20
DefinitionRNA polymerase ECF-subfamily sigma factor M.W (Da) 20728
Note AseI frg.
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_6385 putative RNA polymerase ECF-subfamily sigma factor3019.0e-107
coelSCO1876 putative RNA polymerase sigma factor2682.0e-93

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2);

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r4_21Sigma-70, region 4110-16049.42.5e-13

Sigma70_r21Sigma-70 region 216-8137.51.4e-09

Sigma70_r41Sigma-70, region 4113-16127.02.1e-06

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_053128751.1 SigE family RNA polymerase sigma factor [Streptomyces ambofa... 7891.6e-105
WP_217144718.1 SigE family RNA polymerase sigma factor [Streptomyces sp. AC... 7458.3e-99
WP_019329299.1 MULTISPECIES: SigE family RNA polymerase sigma factor [Strep... 7371.3e-97
WP_055416283.1 SigE family RNA polymerase sigma factor [Streptomyces pactum... 7361.9e-97
WP_193516537.1 SigE family RNA polymerase sigma factor [Streptomyces vinace... 7343.6e-97
WP_217235767.1 SigE family RNA polymerase sigma factor [Streptomyces sp. AC... 7343.9e-97
WP_067430265.1 SigE family RNA polymerase sigma factor [Streptomyces lincol... 7311.1e-96
WP_043374411.1 SigE family RNA polymerase sigma factor [Streptomyces mutabi... 7301.5e-96
WP_216881122.1 MULTISPECIES: SigE family RNA polymerase sigma factor [uncla... 7292.5e-96
WP_073721499.1 SigE family RNA polymerase sigma factor [Streptomyces sp. CB... 7292.6e-96

PSORT result

LocalizationCertaintyPSORT said
Not Clear