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IDSAM23877_3047 TypeCDS
From3230481 nt length693
To3229789 aa length230
Gene pI6.97
DefinitionSigma 54 modulation protein/SSU ribosomal protein S30P M.W (Da) 25462
Note AseI frg.
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_5067 putative sigma 54 modulation protein/ribosomal protein S30EA4023.0e-144
coelSCO3009 hypothetical protein4492.0e-163
sgrSGR_4527 conserved hypothetical protein3609.0e-129

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Ribosom_S30AE_C1Sigma 54 modulation/S30EA ribosomal protein C terminus154-20778.42.2e-22

Ribosomal_S30AE1Sigma 54 modulation protein / S30EA ribosomal protein3-10072.14.5e-20

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_053131995.1 ribosome-associated translation inhibitor RaiA [Streptomyces... 11071.3e-152
WP_225638873.1 MULTISPECIES: ribosome-associated translation inhibitor RaiA... 11019.9e-152
GGQ70214.1 ribosomal subunit interface protein [Streptomyces flaveolus] 10982.8e-151
WP_189231093.1 ribosome-associated translation inhibitor RaiA [Streptomyces... 10923.6e-150
MYR42098.1 ribosome-associated translation inhibitor RaiA [Streptomyces sp. ... 10904.5e-150
WP_059301636.1 MULTISPECIES: ribosome-associated translation inhibitor RaiA... 10852.9e-149
WP_077800589.1 ribosome-associated translation inhibitor RaiA [Streptomyces... 10845.0e-149
WP_064728207.1 ribosome-associated translation inhibitor RaiA [Streptomyces... 10827.7e-149
MZE69903.1 ribosome-associated translation inhibitor RaiA [Streptomyces sp. ... 10821.0e-148
WP_031050675.1 ribosome-associated translation inhibitor RaiA [Streptomyces... 10801.6e-148

PSORT result

LocalizationCertaintyPSORT said
Not Clear