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IDSAM23877_3158 TypeCDS
From3357844 nt length3534
To3354311 aa length1177
Genemfd pI5.19
DefinitionTranscription-repair-coupling factor M.W (Da) 128696
Note AseI frg.
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_3549 putative transcriptional-repair coupling factor21500.0e+00
coelSCO3109 putative transcriptional-repair coupling factor22390.0e+00
sgrSGR_4422 putative transcriptional-repair coupling factor20870.0e+00

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

CarD_CdnL_TRCF1CarD-like/TRCF domain500-599107.15.2e-31

TRCF1TRCF domain1033-111584.44.9e-24

DEAD1DEAD/DEAH box helicase631-79161.76.7e-17

Helicase_C1Helicase conserved C-terminal domain834-93357.91.1e-15

ResIII1Type III restriction enzyme, res subunit630-78525.69.1e-06

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_053132354.1 transcription-repair coupling factor [Streptomyces ambofacie... 54610.0e+00
WP_063482254.1 transcription-repair coupling factor [Streptomyces ambofacie... 53980.0e+00
WP_055417320.1 transcription-repair coupling factor [Streptomyces pactum] >... 53160.0e+00
WP_109204426.1 MULTISPECIES: transcription-repair coupling factor [unclassi... 53090.0e+00
WP_031021350.1 transcription-repair coupling factor [Streptomyces sp. NRRL ... 53090.0e+00
WP_210902755.1 transcription-repair coupling factor [Streptomyces sp. RM99]... 53070.0e+00
WP_100048013.1 transcription-repair coupling factor [Streptomyces sp. Alain... 53070.0e+00
WP_043372209.1 transcription-repair coupling factor [Streptomyces mutabilis... 53070.0e+00
WP_192342175.1 MULTISPECIES: transcription-repair coupling factor [unclassi... 53060.0e+00
PAK23256.1 transcription-repair coupling factor [Streptomyces sp. alain-838] 53060.0e+00

PSORT result

LocalizationCertaintyPSORT said
Not Clear