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IDSAM23877_3326 TypeCDS
From3536508 nt length591
To3537098 aa length196
Gene pI10.62
DefinitionRNA polymerase sigma factor M.W (Da) 21697
Note AseI frg.
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_3844 putative RNA polymerase ECF-subfamily sigma factor2904.0e-102
coelSCO4409 putative RNA polymerase sigma factor3092.0e-109
sgrSGR_3060 putative RNA polymerase ECF-subfamily sigma factor1625.0e-52

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 229-9444.11.2e-11

Sigma70_r4_21Sigma-70, region 4127-17328.39.4e-07

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_053132809.1 sigma-70 family RNA polymerase sigma factor [Streptomyces am... 6322.3e-81
WP_159328766.1 sigma-70 family RNA polymerase sigma factor [Streptomyces te... 6021.0e-76
WP_115743509.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 6011.5e-76
WP_161380472.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 6001.6e-76
WP_161329187.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 5992.5e-76
WP_121747609.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 5983.7e-76
WP_189746021.1 sigma-70 family RNA polymerase sigma factor [Streptomyces te... 5974.6e-76
WP_122619773.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [u... 5975.7e-76
WP_133888983.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 5966.9e-76
WP_217171378.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 5951.1e-75

PSORT result

LocalizationCertaintyPSORT said
Not Clear