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IDSAM23877_3367 TypeCDS
From3579793 nt length573
To3579221 aa length190
Gene pI9.50
Definition2'-5' RNA ligase M.W (Da) 20369
Note AseI frg.
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_3892 putative 2'-5' RNA ligase2752.0e-96
coelSCO4338 hypothetical protein2705.0e-94

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2);

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

LigT_PEase2LigT like Phosphoesterase9-90, 99-17178.62.7e-22

2_5_RNA_ligase212'-5' RNA ligase superfamily16-16557.51.3e-15

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_053132910.1 RNA 2',3'-cyclic phosphodiesterase [Streptomyces ambofaciens... 7666.1e-102
WP_219180784.1 RNA 2',3'-cyclic phosphodiesterase [Streptomyces sp. AC542_R... 7006.5e-92
WP_125538075.1 RNA 2',3'-cyclic phosphodiesterase [Streptomyces sp. WAC0627... 6945.7e-91
WP_127436565.1 RNA 2',3'-cyclic phosphodiesterase [Streptomyces sp. WAC0545... 6921.1e-90
WP_109204487.1 RNA 2',3'-cyclic phosphodiesterase [Streptomyces sp. CS207] ... 6902.0e-90
WP_086876627.1 MULTISPECIES: RNA 2',3'-cyclic phosphodiesterase [Streptomyc... 6902.0e-90
WP_137961154.1 MULTISPECIES: RNA 2',3'-cyclic phosphodiesterase [unclassifi... 6893.0e-90
WP_031016134.1 MULTISPECIES: RNA 2',3'-cyclic phosphodiesterase [Streptomyc... 6884.8e-90
WP_127440066.1 MULTISPECIES: RNA 2',3'-cyclic phosphodiesterase [Streptomyc... 6869.2e-90
WP_125770592.1 RNA 2',3'-cyclic phosphodiesterase [Streptomyces sp. WAC0270... 6851.3e-89

PSORT result

LocalizationCertaintyPSORT said
Not Clear