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IDSAM23877_3676 TypeCDS
From3916685 nt length633
To3916053 aa length210
Gene pI9.67
DefinitionRNA polymerase sigma factor M.W (Da) 22998
Note AseI frg.
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_4207 putative RNA polymerase ECF-subfamily sigma factor2802.0e-98
coelSCO4005 putative RNA polymerase sigma factor3046.0e-108
sgrSGR_3603 putative RNA polymerase ECF-subfamily sigma factor2801.0e-97

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r4_21Sigma-70, region 4146-19963.31.1e-17

Sigma70_r41Sigma-70, region 4152-20151.35.5e-14

Sigma70_r21Sigma-70 region 254-11834.41.2e-08

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_162492108.1 SigE family RNA polymerase sigma factor [Streptomyces ambofa... 7698.5e-102
WP_063482464.1 SigE family RNA polymerase sigma factor [Streptomyces ambofa... 7681.0e-101
WP_055422054.1 SigE family RNA polymerase sigma factor [Streptomyces pactum... 7531.2e-99
WP_064728731.1 MULTISPECIES: SigE family RNA polymerase sigma factor [Strep... 7521.6e-99
WP_114528241.1 SigE family RNA polymerase sigma factor [Streptomyces parvul... 7512.5e-99
WP_210960161.1 SigE family RNA polymerase sigma factor [Streptomyces sp. b9... 7523.7e-99
WP_163015842.1 MULTISPECIES: SigE family RNA polymerase sigma factor [uncla... 7487.4e-99
WP_070388542.1 MULTISPECIES: SigE family RNA polymerase sigma factor [Strep... 7487.7e-99
WP_224306213.1 SigE family RNA polymerase sigma factor [Streptomyces olivac... 7488.9e-99
7441.8e-98

PSORT result

LocalizationCertaintyPSORT said
Not Clear