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IDSAM23877_3909 TypeCDS
From4165177 nt length492
To4165668 aa length163
Gene pI10.62
DefinitionRNA polymerase ECF sigma factor M.W (Da) 19051
Note AseI frg.
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_93 putative RNA polymerase ECF-subfamily sigma factor2834.0e-100
coelSCO3736 putative RNA polymerase ECF sigma factor3213.0e-115

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2);

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r4_21Sigma-70, region 4101-15144.39.1e-12

Sigma70_r21Sigma-70 region 212-7642.92.7e-11

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_053134308.1 RNA polymerase sigma factor [Streptomyces ambofaciens] >gb 7371.9e-98
WP_161332684.1 RNA polymerase sigma factor [Streptomyces sp. SID5789] >gb 7311.7e-97
WP_003975205.1 MULTISPECIES: RNA polymerase sigma factor [Streptomyces] >gb... 7302.6e-97
WP_122616678.1 MULTISPECIES: RNA polymerase sigma factor [unclassified Stre... 7277.0e-97
WP_153178812.1 MULTISPECIES: RNA polymerase sigma factor [unclassified Stre... 7277.3e-97
WP_164367121.1 RNA polymerase sigma factor [Streptomyces diastaticus] >gb 7261.2e-96
WP_064728923.1 MULTISPECIES: RNA polymerase sigma factor [Streptomyces] >gb... 7251.6e-96
WP_190052570.1 RNA polymerase sigma factor [Streptomyces lomondensis] >dbj 7251.6e-96
WP_030180518.1 RNA polymerase sigma factor [Streptomyces violaceorubidus] 7241.9e-96
WP_043371515.1 MULTISPECIES: RNA polymerase sigma factor [Streptomyces] >gb... 7242.4e-96

PSORT result

LocalizationCertaintyPSORT said
Not Clear