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IDSAM23877_4236 TypeCDS
From4501288 nt length795
To4500494 aa length264
Gene pI8.98
DefinitionECF sigma factor M.W (Da) 28779
Note AseI frg.
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_4735 putative RNA polymerase ECF-subfamily sigma factor (BldN)4461.0e-161
coelSCO3323 putative RNA polymerase sigma factor3543.0e-126
sgrSGR_4151 RNA polymerase ECF-subfamily sigma factor4606.0e-167

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 2105-17264.84.2e-18

Sigma70_r4_21Sigma-70, region 4204-25551.74.5e-14

Sigma70_r41Sigma-70, region 4210-25538.55.3e-10

Sigma70_ECF1ECF sigma factor88-24535.96e-09

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_053135036.1 sigma-70 family RNA polymerase sigma factor [Streptomyces am... 11168.3e-153
WP_122615548.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 10977.1e-150
WP_055418563.1 sigma-70 family RNA polymerase sigma factor [Streptomyces pa... 10969.0e-150
WP_107479169.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [u... 10951.1e-149
WP_217245716.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 10951.1e-149
WP_073725606.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 10941.6e-149
WP_164383732.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [u... 10941.9e-149
WP_217139624.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 10923.0e-149
WP_030145239.1 sigma-70 family RNA polymerase sigma factor [Streptomyces vi... 10914.3e-149
WP_217168638.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 10914.9e-149

PSORT result

LocalizationCertaintyPSORT said
Not Clear