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IDSAM23877_4256 TypeCDS
From4524434 nt length1194
To4525627 aa length397
GenertcB pI8.94
DefinitionRNA-splicing ligase RtcB M.W (Da) 43340
Note AseI frg.
SignalP v.4.0Non-secretory protein | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_4753 hypothetical protein7460.0e+00
coelSCO3299 hypothetical protein7930.0e+00
sgrSGR_4185 conserved hypothetical protein7340.0e+00

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

RtcB1tRNA-splicing ligase RtcB29-397435.22.6e-130

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_053135094.1 RtcB family protein [Streptomyces ambofaciens] >gb 20330.0e+00
WP_063482714.1 RtcB family protein [Streptomyces ambofaciens] >gb 20300.0e+00
WP_217245684.1 RtcB family protein [Streptomyces sp. AC602_WCS936] 19860.0e+00
WP_225639046.1 MULTISPECIES: RtcB family protein [unclassified Streptomyces... 19800.0e+00
WP_161167847.1 RtcB family protein [Streptomyces sp. SID5910] >gb 19780.0e+00
WP_073725533.1 RtcB family protein [Streptomyces sp. CB02414] >gb 19770.0e+00
WP_030145262.1 RtcB family protein [Streptomyces violaceorubidus] 19740.0e+00
WP_076975648.1 RtcB family protein [Streptomyces sp. M1013] >gb 19690.0e+00
WP_007383845.1 MULTISPECIES: RtcB family protein [Streptomyces] >gb 19650.0e+00
WP_161332616.1 RtcB family protein [Streptomyces sp. SID5789] >gb 19640.0e+00

PSORT result

LocalizationCertaintyPSORT said
Not Clear