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IDSAM23877_4583 TypeCDS
From4843560 nt length588
To4844147 aa length195
GenesigD pI6.31
DefinitionECF RNA polymerase sigma factor SigD M.W (Da) 21314
Note AseI frg.
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_4999 putative RNA polymerase ECF-subfamily sigma factor3572.0e-128
coelSCO4769 ECF sigma factor3867.0e-140
sgrSGR_2758 putative RNA polymerase ECF-subfamily sigma factor3556.0e-128

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r41Sigma-70, region 4142-19146.02.5e-12

Sigma70_r4_21Sigma-70, region 4141-18944.11.1e-11

Sigma70_r21Sigma-70 region 231-10239.23.9e-10

Sigma70_ECF1ECF sigma factor14-17931.71.2e-07

HTH_161Helix-turn-helix domain16-7726.44.7e-06

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_019329587.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 10021.1e-137
WP_121748737.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 10002.3e-137
WP_055418308.1 sigma-70 family RNA polymerase sigma factor [Streptomyces pa... 9984.5e-137
WP_225638701.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [u... 9967.9e-137
WP_031034860.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 9968.5e-137
WP_104635747.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 9932.1e-136
WP_030400271.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 9932.3e-136
WP_188184014.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 9914.2e-136
WP_087807702.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 9914.2e-136
WP_003974204.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 9914.7e-136

PSORT result

LocalizationCertaintyPSORT said
Not Clear