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IDSAM23877_4684 TypeCDS
From4957511 nt length663
To4958173 aa length220
Gene pI6.37
DefinitionECF sigma factor M.W (Da) 23602
Note AseI frg.
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_3385 putative RNA polymerase ECF-subfamily sigma factor3718.0e-133
coelSCO4866 putative ECF sigma factor4092.0e-148
sgrSGR_2673 putative RNA polymerase ECF-subfamily sigma factor3109.0e-109

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 227-9365.03.5e-18

Sigma70_r4_21Sigma-70, region 4127-17641.37.9e-11

Sigma70_ECF1ECF sigma factor7-16125.96.9e-06

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_053136037.1 RNA polymerase sigma factor [Streptomyces ambofaciens] >gb 10122.3e-138
WP_210958127.1 RNA polymerase sigma factor [Streptomyces sp. b94] >lcl 9896.8e-135
WP_121748819.1 RNA polymerase sigma factor [Streptomyces sp. E2N166] 9834.6e-134
WP_055418219.1 RNA polymerase sigma factor [Streptomyces pactum] >gb 9774.4e-133
MZE74032.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp. SID... 9731.4e-132
WP_164411692.1 RNA polymerase sigma factor [Streptomyces coelicoflavus] 9731.6e-132
WP_217168804.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 9704.6e-132
WP_059302477.1 MULTISPECIES: RNA polymerase sigma factor [Streptomyces] >lc... 9696.9e-132
WP_125493389.1 RNA polymerase sigma factor [Streptomyces sp. WAC 04229] >gb... 9697.6e-132
WP_073724815.1 RNA polymerase sigma factor [Streptomyces sp. CB02414] >gb 9697.8e-132

PSORT result

LocalizationCertaintyPSORT said
Not Clear