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IDSAM23877_4776 TypeCDS
From5054594 nt length510
To5054085 aa length169
Gene pI10.81
Definitionputative sigma factor M.W (Da) 18527
NoteEvidence 3 : Function proposed based on presence of conserved amino acid motif%2C structural feature or limited homology AseI frg.
SignalP v.4.0Non-secretory protein | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_3304 putative RNA polymerase ECF-subfamily sigma factor2232.0e-76
coelSCO4960 hypothetical protein2662.0e-93
sgrSGR_2576 putative RNA polymerase ECF-subfamily sigma factor1251.0e-37

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r41Sigma-70, region 4103-14634.31.1e-08

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_053136272.1 RNA polymerase subunit sigma-70 [Streptomyces ambofaciens] >... 4771.5e-58
WP_063482944.1 RNA polymerase subunit sigma-70 [Streptomyces ambofaciens] >... 4622.6e-56
WP_210957730.1 RNA polymerase subunit sigma-70 [Streptomyces sp. b94] >lcl 4321.0e-51
WP_055418150.1 RNA polymerase subunit sigma-70 [Streptomyces pactum] >gb 4311.5e-51
WP_100045977.1 RNA polymerase subunit sigma-70 [Streptomyces sp. Alain-F2R5... 4292.1e-51
WP_217161669.1 RNA polymerase subunit sigma-70 [Streptomyces sp. AC512_CC83... 4232.6e-50
OSC72390.1 RNA polymerase subunit sigma-70 [Streptomyces sp. 4F] 4213.8e-50
WP_073724716.1 RNA polymerase subunit sigma-70 [Streptomyces sp. CB02414] >... 4171.6e-49
WP_217246927.1 RNA polymerase subunit sigma-70 [Streptomyces sp. AC602_WCS9... 4162.1e-49
WP_043380562.1 DNA-directed RNA polymerase sigma-70 factor [Streptomyces mu... 4162.2e-49

PSORT result

LocalizationCertaintyPSORT said
Not Clear