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IDSAM23877_5349 TypeCDS
From5686786 nt length564
To5687349 aa length187
GenerimM pI4.02
DefinitionRibosome maturation factor RimM M.W (Da) 20355
Note AseI frg.
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_2642 putative 16S rRNA processing protein2953.0e-104
coelSCO5593 hypothetical protein3391.0e-121
sgrSGR_1887 putative 16S rRNA processing protein2803.0e-98

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

RimM1RimM N-terminal domain5-8379.11.9e-22

PRC1PRC-barrel domain93-16645.93.9e-12

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_053137694.1 ribosome maturation factor RimM [Streptomyces ambofaciens] >... 8332.8e-112
WP_063483196.1 ribosome maturation factor RimM [Streptomyces ambofaciens] >... 8231.1e-110
NEC32147.1 ribosome maturation factor RimM [Streptomyces rubrogriseus] 7995.0e-107
WP_030188625.1 ribosome maturation factor RimM [Streptomyces violaceorubidu... 7934.6e-106
WP_109036067.1 ribosome maturation factor RimM [Streptomyces rubrogriseus] 7882.8e-105
WP_203695308.1 ribosome maturation factor RimM [Streptomyces rubrogriseus] 7847.2e-105
WP_159329351.1 ribosome maturation factor RimM [Streptomyces tendae] 7831.2e-104
WP_108990230.1 ribosome maturation factor RimM [Streptomyces coelicoflavus] 7831.9e-104
WP_087807019.1 ribosome maturation factor RimM [Streptomyces sp. CS113] >gb... 7832.3e-104
WP_114529309.1 ribosome maturation factor RimM [Streptomyces parvulus] >gb 7812.7e-104

PSORT result

LocalizationCertaintyPSORT said
Not Clear