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IDSAM23877_6598 TypeCDS
From7137902 nt length660
To7137243 aa length219
Gene pI8.27
Definitionputative RNA polymerase sigma factor M.W (Da) 24174
NoteEvidence 3 : Function proposed based on presence of conserved amino acid motif%2C structural feature or limited homology AseI frg.
SignalP v.4.0Non-secretory protein | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_7292 putative RNA polymerase ECF-subfamily sigma factor2582.0e-89
coelSCO0942 putative RNA polymerase sigma factor3051.0e-107
sgrSGR_718 putative RNA polymerase ECF-subfamily sigma factor2091.0e-69

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 260-12756.51.5e-15

Sigma70_r41Sigma-70, region 4161-20950.01.4e-13

Sigma70_r4_21Sigma-70, region 4156-20748.45e-13

Sigma70_ECF1ECF sigma factor80-20332.19e-08

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
AKZ59643.1 putative RNA polymerase sigma factor [Streptomyces ambofaciens AT... 8021.7e-106
GGR93363.1 RNA polymerase sigma factor SigL [Streptomyces parvulus] 7673.9e-101
GGZ70221.1 RNA polymerase sigma factor SigL [Streptomyces plicatus] 7543.4e-99
GGQ13430.1 RNA polymerase sigma factor SigL [Streptomyces mutabilis] 7501.2e-98
GGZ01406.1 RNA polymerase sigma factor SigL [Streptomyces geysiriensis] >db... 7502.6e-98
7354.0e-96
GHB32945.1 RNA polymerase sigma factor SigL [Streptomyces viridiviolaceus] 7261.0e-94
GGQ92386.1 RNA polymerase sigma factor SigL [Streptomyces flaveolus] 7041.2e-91
GGP32510.1 RNA polymerase sigma factor SigL [Streptomyces griseoincarnatus]... 6929.2e-90
GHG27510.1 RNA polymerase sigma factor SigL [Streptomyces viridodiastaticus... 6911.4e-89

PSORT result

LocalizationCertaintyPSORT said
Not Clear