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IDSAM23877_7075 TypeCDS
From7637685 nt length609
To7637077 aa length202
Gene pI7.63
DefinitionRNA polymerase sigma factor M.W (Da) 22498
Note AseI frg.
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_1215 putative RNA polymerase ECF-subfamily sigma factor (sig17)2091.0e-69
coelSCO0194 putative sigma factor2943.0e-103

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2);

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 240-10767.27.4e-19

Sigma70_r41Sigma-70, region 4141-18958.92.4e-16

Sigma70_r4_21Sigma-70, region 4137-18851.45.6e-14

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_053141395.1 sigma-70 family RNA polymerase sigma factor [Streptomyces am... 8814.4e-119
WP_063484042.1 sigma-70 family RNA polymerase sigma factor [Streptomyces am... 8781.3e-118
WP_121704492.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 7252.7e-95
WP_076977521.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 7244.3e-95
WP_059297058.1 sigma-70 family RNA polymerase sigma factor [Streptomyces ca... 7201.4e-94
WP_210974853.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 7158.5e-94
WP_133885139.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 7114.6e-93
WP_164382886.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 7071.7e-92
WP_210974980.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 7029.2e-92
WP_121745243.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 7022.1e-91

PSORT result

LocalizationCertaintyPSORT said
Not Clear