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IDSAM23877_7085 TypeCDS
From7649849 nt length891
To7648959 aa length296
Gene pI5.07
Definitionputative RNA polymerase ECF-subfamily sigma factor M.W (Da) 31338
NoteEvidence 3 : Function proposed based on presence of conserved amino acid motif%2C structural feature or limited homology AseI frg.
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
sgrSGR_5030 putative RNA polymerase ECF-subfamily sigma factor1705.0e-52

*sgr, Streptomyces griseus IFO13350;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 215-7847.11.3e-12

Sigma70_r4_21Sigma-70, region 4115-16531.31.1e-07

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_053141415.1 sigma-70 family RNA polymerase sigma factor [Streptomyces am... 14650.0e+00
WP_012893551.1 sigma-70 family RNA polymerase sigma factor [Streptosporangi... 11973.2e-164
WP_090770330.1 sigma-70 family RNA polymerase sigma factor [Nonomuraea mari... 11801.4e-161
WP_030922667.1 sigma-70 family RNA polymerase sigma factor [Streptosporangi... 11791.8e-161
WP_189940122.1 sigma-70 family RNA polymerase sigma factor [Streptomyces au... 11756.8e-161
WP_089213926.1 sigma-70 family RNA polymerase sigma factor [Streptosporangi... 11661.7e-159
WP_110695409.1 sigma-70 family RNA polymerase sigma factor [Streptosporangi... 11644.1e-159
WP_059422968.1 sigma-70 family RNA polymerase sigma factor [Streptomyces az... 11611.1e-158
WP_065963567.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 11602.5e-158
WP_127936922.1 sigma-70 family RNA polymerase sigma factor [Nonomuraea poly... 11531.8e-157

PSORT result

LocalizationCertaintyPSORT said
Not Clear