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IDSAM23877_7515 TypeCDS
From8184842 nt length864
To8183979 aa length287
Gene pI4.48
Definitionputative RNA polymerase ECF-subfamily sigma factor M.W (Da) 31073
NoteEvidence 3 : Function proposed based on presence of conserved amino acid motif%2C structural feature or limited homology AseI frg.
SignalP v.4.0Non-secretory protein | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_7424 putative RNA polymerase ECF-subfamily sigma factor2844.0e-96

*avm, Streptomyces avermitilis;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 216-7448.55e-13

Sigma70_r4_21Sigma-70, region 4111-16133.42.4e-08

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_053125800.1 sigma-70 family RNA polymerase sigma factor [Streptomyces am... 11294.4e-154
WP_019330802.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 10635.5e-144
WP_031022290.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 10601.4e-143
WP_109203838.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 10592.3e-143
WP_192342450.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 10582.5e-143
WP_164244058.1 sigma-70 family RNA polymerase sigma factor [Streptomyces co... 9951.0e-133
WP_217139693.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 9793.6e-131
WP_164286920.1 sigma-70 family RNA polymerase sigma factor [Streptomyces ro... 8153.1e-106
WP_101390075.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 7744.6e-100
WP_188278420.1 RNA polymerase sigma factor SigJ [Streptomyces sp. CBMA152] ... 7511.5e-96

PSORT result

LocalizationCertaintyPSORT said
Not Clear