| ID | SAVERM_1024
| Type | CDS
|
| From | 1291800
| nt length | 1029
|
| To | 1292828
| aa length | 342
|
| Gene | crtB
| pI | 10.09
|
| Definition | phytoene synthase
| M.W (Da) | 37736
|
| Note | crt gene cluster, PF00494: Squalene/phytoene synthase
| AseI frg. | A
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | metabolism of lipids
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO0187 putative phytoene synthase | 383 | 3.0e-134
|
| sgr | SGR_7081t putative phytoene synthase | 405 | 1.0e-142
|
| sam | SAM23877_0812 Phytoene synthase | 389 | 1.0e-136
|
| scab | SCAB5441 phytoene synthase | 481 | 1.0e-172
|
| sace | SACE_3269 putative phytoene synthase | 312 | 3.0e-106
|
| nfar | nfa43980 phytoene synthase | 228 | 5.9e-61
|
| cglu | gi|19553629 COG1562:Phytoene/squalene synthetase [Corynebacterium glutamicum] | 95 | 4.2e-21
|
| bsub | BG12241 yisP, yucD; similar to phytoene synthase [EC:2.5.1.-] | 66 | 2.6e-12
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| SQS_PSY | 1 | Squalene/phytoene synthase | 29-291 | 215.1 | 1.1e-63
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_200743912.1 | phytoene/squalene synthase family protein [Streptomyces sp. ...
| 1154 | 4.1e-156 |
| WP_059078035.1 | phytoene/squalene synthase family protein [Streptomyces scab...
| 1151 | 1.6e-155 |
| WP_200724161.1 | phytoene/squalene synthase family protein [Streptomyces sp. ...
| 1150 | 1.7e-155 |
| WP_189918805.1 | phytoene/squalene synthase family protein [Streptomyces asoe...
| 1150 | 2.0e-155 |
| WP_109493510.1 | phytoene/squalene synthase family protein [Streptomyces sp. ...
| 1149 | 2.3e-155 |
| NUO44962.1 | phytoene/squalene synthase family protein [Streptomyces sp.] >gb
| 1148 | 3.5e-155 |
| WP_037724913.1 | MULTISPECIES: phytoene/squalene synthase family protein [Str...
| 1144 | 1.6e-154 |
| WP_141208491.1 | phytoene/squalene synthase family protein [Streptomyces gris...
| 1142 | 2.4e-154 |
| WP_062239594.1 | phytoene/squalene synthase family protein [Streptomyces gris...
| 1141 | 4.4e-154 |
| WP_132834842.1 | phytoene/squalene synthase family protein [Streptomyces sp. ...
| 1140 | 4.7e-154 |
PSORT result
| Localization | Certainty | PSORT said
|
| membrane | 0.1829 | Seems to have no N-terminal signal seq.
|