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IDSAVERM_1087 TypeCDS
From1375028 nt length888
To1375915 aa length295
Genesig14 pI5.04
Definitionputative RNA polymerase sigma factor M.W (Da)32847
NoteRNA polymerase alternative sigma factor, PF04539: Sigma-70 region 3 AseI frg.A
SignalP v.4.0Non-secretory protein | plot CategoryRNA initiation

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r41Sigma-70, region 4240-28759.71.4e-16

Sigma70_r21Sigma-70 region 268-13859.32.1e-16

Sigma70_r31Sigma-70 region 3148-20852.73.2e-14

Sigma70_r4_21Sigma-70, region 4238-27830.91.4e-07

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
EGG46926.1 RNA polymerase sigma factor sig8 [Streptomyces griseoaurantiacus ... 11052.9e-150
WP_078630925.1 MULTISPECIES: RNA polymerase sigma factor SigF [Streptomyces... 11053.0e-150
WP_030378023.1 MULTISPECIES: RNA polymerase sigma factor SigF [unclassified... 11001.6e-149
WP_166630683.1 RNA polymerase sigma factor SigF [Streptomyces sp. GC420] >g... 10846.7e-147
RNL73288.1 RNA polymerase sigma factor SigF [Streptomyces sp. I6] 10551.5e-142
WP_109296780.1 RNA polymerase sigma factor SigF [Streptomyces spongiicola] ... 10541.8e-142
WP_108907854.1 MULTISPECIES: RNA polymerase sigma factor SigF [Streptomyces... 10489.7e-142
WP_173265350.1 RNA polymerase sigma factor SigF [Streptomyces sp. CWH03] 10411.3e-140
WP_103551794.1 RNA polymerase sigma factor SigF [Streptomyces populi] >gb 10412.3e-140
WP_095932368.1 RNA polymerase sigma factor SigF [Streptomyces sp. Tue6028] ... 10393.9e-140

PSORT result

LocalizationCertaintyPSORT said
cytoplasm0.3024 Seems to have no N-terminal signal seq.