| ID | SAVERM_1121
| Type | CDS
|
| From | 1406456
| nt length | 957
|
| To | 1407412
| aa length | 318
|
| Gene |
| pI | 7.63
|
| Definition | putative LysR-family transcriptional regulator
| M.W (Da) | 34257
|
| Note | PF00126: Bacterial regulatory helix-turn-helix protein, lysR family
| AseI frg. | A
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | regulation
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO7307 putative LysR-family transcriptional regulator | 404 | 4.0e-143
|
| sgr | SGR_6887 putative LysR-family transcriptional regulator | 425 | 2.0e-151
|
| sam | SAM23877_0903 hypothetical protein | 398 | 5.0e-141
|
| scab | SCAB85741 putative LysR-family transcriptional regulator | 415 | 1.0e-147
|
| nfar | nfa1460 transcriptional regulator | 379 | 2.5e-106
|
| mtub | gi|15609122 chromosome replication initiation inhibitor protein [Mycobacterium tuberculosis H37Rv] | 237 | 6.7e-64
|
| cglu | gi|19552484 COG0583:Transcriptional regulator [Corynebacterium glutamicum] | 228 | 2.9e-61
|
| ecoli | gi|16130817 chromosome replication initiation inhibitor protein [Escherichia coli K12] | 154 | 9.7e-39
|
| paer | PA4363 [gene=iciA] [prot=inhibitor of chromosome initiation IciA] [comment=PA4363] | 174 | 7.3e-45
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| LysR_substrate | 1 | LysR substrate binding domain | 92-296 | 62.0 | 4.4e-17
|
| HTH_1 | 1 | Bacterial regulatory helix-turn-helix protein, lysR family | 7-65 | 61.1 | 6.6e-17
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_189325040.1 | LysR family transcriptional regulator ArgP [Streptomyces fla...
| 1088 | 4.7e-147 |
| WP_033319901.1 | LysR family transcriptional regulator ArgP [Streptomyces yer...
| 1085 | 1.6e-146 |
| NGO47643.1 | LysR family transcriptional regulator ArgP [Streptomyces ureilyti...
| 1078 | 1.6e-145 |
| WP_206342635.1 | LysR family transcriptional regulator ArgP [Streptomyces ure...
| 1072 | 1.2e-144 |
| WP_151484445.1 | LysR family transcriptional regulator ArgP [Streptomyces alb...
| 1061 | 7.3e-143 |
|
| 1049 | 5.2e-141 |
| WP_165262783.1 | LysR family transcriptional regulator ArgP [Streptomyces sca...
| 1044 | 3.2e-140 |
| WP_186001055.1 | LysR family transcriptional regulator ArgP [Streptomyces sp....
| 1043 | 3.6e-140 |
| WP_200400764.1 | LysR family transcriptional regulator ArgP [Streptomyces sp....
| 1036 | 4.0e-139 |
| WP_189839249.1 | LysR family transcriptional regulator ArgP [Streptomyces umb...
| 1022 | 5.3e-137 |
PSORT result
| Localization | Certainty | PSORT said
|
| membrane | 0.1426 | Seems to have no N-terminal signal seq.
|